1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgaatcttctcgctattaaaaaaaactataatactaaccactaacatttgccaataaaaacaaaaaacccacgttaacctaattttcctcaattcctcagGTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAG
species | Glycine max |
transcript | GLYMA14G40430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTCGAATACGAG GTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGEST: gi|4297809|gb|AI442671.1|AI442671
genomic: AATACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTGGAATACGAGgtaacaattc ... aattcctcagGTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAG
EST: AATACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTGGAATACGAG GTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGEST: gi|10709240|gb|BF008964.1|BF008964
genomic: AATACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTGGAATACGAGgtaacaattc ... aattcctcagGTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAG
EST: AATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAG GTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAG
genomic: AATACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTGGAATACGAGgtaacaattc ... aattcctcagGTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAG
atttgccaataaaaacaaaaaacccacgttaacctaattttcctcaattcctcagGTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAG
acctaat putative branch site (score: 3)
ttttcctcaattcctc CT-rich tract
aataaaaacaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaatcttctcgctattaaaaaaaactataatactaaccactaacatttgccaataaaaacaaaaaacccacgttaacctaattttcctcaattcctcagGTTCACCGCCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAG
- - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - -ccactaa
- - - - - - - - - - - - - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccac