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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcgttgtttgatttccctttttctcttgttctcttgttttttttttttgtgtgtataaacgtgtgcgtgttgttgtgatttgaaagGGAGGCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAACGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCGCGGCTTATGGATATCATCATCAATTCT

Basic information

species Glycine max
transcript GLYMA14G40320.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G40320.2 (Glycine max), 3'ss of exon 2
lower sequence: AT4G24190.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgtgcgtt-gtttgatttccctttttctcttgttctcttgttttttttttttgtgtgtataaacgtgtgcgtgttgttgtgatttgaaagGGAGGCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAACGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCGCGGCTTATGGATATCATCATCAATTCT
      ||| || |  | |   |||  |  | |  || | | ||   ||  |||  | |     | | | ||  ||  | ||||  || || ||| | |||||||| || ||||   | || || || |||||||||||||||||||||||||| || || || ||||||||||| || || ||||| |||
------gttagtgttctgttagtttcacggtagaactttcgcttggattgcttgaatctt--gccttattcgaattcgtttgatc-gacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTTGAGTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCT

upper sequence: GLYMA14G40320.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgcgttgtttgatttccctttttctcttgttctcttgttttttttttttgtgtgtataaacgtgtgcgtgttgttgtgatttgaaagGGAGGCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAACGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCGCGGCTTATGGATATCATCATCAATTCT
|| |    | ||  | |      ||| | || |||  || | ||||| ||||   | | | || |||    |  |||| ||||||   ||||| || ||||| ||||| || |||  ||||||   ||| ||||||||||||||||| || || || ||||| ||||| ||||||||||| ||||| |||
gtttttacttttctagtgaatcattttttttcttccgtt-tgtttttgttttacatatctcaa-gtgc-ttttctgttttgattt---agGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTTGAGTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCT

upper sequence: GLYMA14G40320.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S126_38V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------------------------------------------------------------gtgtgcgttgtttgatttccctttttctcttgttctcttgttttttttttttgtgtgtataaacgtg-------tgcgtgttgttgtgatttgaa---agGGAGGCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAACGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCGCGGCTTATGGATATCATCATCAATTCT
                                                                                         |||    ||  |   |   | | |    | | |     |   | | ||| |||   ||| |  | ||       || | ||| ||||  |    |   ||||||   ||||| ||  |    |    |||| | ||||| || |||||||||||||||||||| ||||| ||  || | ||||||||||||||| | |||
gtacattacatgagatcactggtttcatgtatctgtgtatgtaacctctcttggggttctacttctggaaagattttaaacagttaattgtgaaaattagtcattgatcatgtcatgcatttggaagtcactctatttgttgcacgtaaattcatgctgacagtgagggttcttgttttcgacatgcagGGAGAGTGAGTCTATGACTTCCAAGAATCTCAGAAGCAATGCTGAGAAGTTTGAGTTCCAAGCTGAAGTCTCAAGGTTGATGGATATCATCATCCACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgttttttttttttgtgtgtataaacgtgtgcgtgttgttgtgatttgaaagGGAGGCGGAGTCGATCTCGAAGAGATCTCTCCGGAGCAACGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCGCGGCTTATGGATATCATCATCAATTCT
     ttttttttttttgtgt  TA-rich tract