1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctccccctcaagccaaaagagaaatatcattcaatcaattagaaagtgaacaaactcccactccaacaaaagtatctcacaacactttcacaacattagAAAACTTTACTTTCTTCTTCACTTTGCTATCATGATTCCTCTTTAAGGCTTGACCATCCAAATAACAAAGATTACCTTTATTTTTCTGTCCTCGCAACAC
species | Glycine max |
transcript | GLYMA14G39750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
agtgaacaaactcccactccaacaaaagtatctcacaacactttcacaacattagAAAACTTTACTTTCTTCTTCACTTTGCTATCATGATTCCTCTTTAAGGCTTGACCATCCAAATAACAAAGATTACCTTTATTTTTCTGTCCTCGCAACAC
atctcac putative branch site (score: 3)
ctttcac putative PPT
aaaagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctccccctcaagccaaaagagaaatatcattcaatcaattagaaagtgaacaaactcccactccaacaaaagtatctcacaacactttcacaacattagAAAACTTTACTTTCTTCTTCACTTTGCTATCATGATTCCTCTTTAAGGCTTGACCATCCAAATAACAAAGATTACCTTTATTTTTCTGTCCTCGCAACAC
-ctccccc
- - - - -caagcca
- - - - - - - - -aagagaaa
- - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - -agtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaca