1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttataatggtcttttgttgcatatttcggtcaccaaccaccttggcactttatttgtggtggcagtatcatcttctgatgccctaatctctaaatcacagATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAAATTACAATTGTAGATCCTGCTGATGAACCTGTGGAGAAATTGGCTGAGAAGACAGAAA
species | Glycine max |
transcript | GLYMA14G38600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA ATTGTTCCTTTTGATCEST: gi|193589805|gb|FK545169.1|FK545169
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATC
EST: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA ATTGTTCCTTTTGATCCTACCAAGEST: gi|7284242|gb|AW596838.1|AW596838
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATCCTACCAAG
EST: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA ATTGTTCCTTTTGATCCTACCAEST: gi|193492254|gb|FK453950.1|FK453950
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATCCTACCA
EST: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA ATTGTTCCTTTTGATCCTA
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATCCTA
cactttatttgtggtggcagtatcatcttctgatgccctaatctctaaatcacagATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAAATTACAATTGTAGATCCTGCTGATGAACCTGTGGAGAAATTGGCTGAGAAGACAGAAA
ctctaaa putative branch site (score: 3)
tctct CT-rich tract
tatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataatggtcttttgttgcatatttcggtcaccaaccaccttggcactttatttgtggtggcagtatcatcttctgatgccctaatctctaaatcacagATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAAATTACAATTGTAGATCCTGCTGATGAACCTGTGGAGAAATTGGCTGAGAAGACAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - -tgcatat
- - - - - - - - - - - - - - -tcaccaa
- - - - - - - - - - - - - - - - - - ccacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgccc