1 5' 3' | 2 5' 3' | 3 5' 3' |
...aagtgacaatttatgttacggagtagtagctaaaactatagagtttggcttagtatatttatttctaataaattaaattaaatggacaatgttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATTGACCACATTTTGGATGCCCAGAGAAAAGGCGAGATCAACGAAGACAAC
species | Glycine max |
transcript | GLYMA14G38580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATEST: gi|37996475|gb|CF808064.1|CF808064
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATEST: gi|14126646|gb|BG791084.1|BG791084
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATEST: gi|4282941|gb|AI440594.1|AI440594
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATEST: gi|15664543|gb|BI701914.1|BI701914
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATEST: gi|193721848|gb|FK659424.1|FK659424
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATEST: gi|37995343|gb|CF806932.1|CF806932
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATEST: gi|13311397|gb|BG405048.1|BG405048
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
EST: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAA GAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
genomic: AAGGAGACCAGGTTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... gttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTAT
tggcttagtatatttatttctaataaattaaattaaatggacaatgttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATTGACCACATTTTGGATGCCCAGAGAAAAGGCGAGATCAACGAAGACAAC
ttctaat putative branch site (score: 2)
tagtatatttatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgacaatttatgttacggagtagtagctaaaactatagagtttggcttagtatatttatttctaataaattaaattaaatggacaatgttataacagGAAGCTTGGAAGCATAAAGAGCAGCAATAACAATGAACTAAAATGCGCTATTGACCACATTTTGGATGCCCAGAGAAAAGGCGAGATCAACGAAGACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - gagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa