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...gttataactattaacttttgactaaacttgaaaaaatcacatttttgatgtggaaccaaatctgatttgagaaccaagttgattttgatggattttgcagGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCA
species | Glycine max |
transcript | GLYMA14G37350.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGAEST: gi|213603629|gb|DB966785.1|DB966785
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGAEST: gi|17519247|gb|BM188289.1|BM188289
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGAEST: gi|5753666|gb|AI960953.1|AI960953
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGA
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGA
tgatgtggaaccaaatctgatttgagaaccaagttgattttgatggattttgcagGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCA
ttttgat putative branch site (score: 4)
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttataactattaacttttgactaaacttgaaaaaatcacatttttgatgtggaaccaaatctgatttgagaaccaagttgattttgatggattttgcagGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - gatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg