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gtactgtctgtgtcattgtctgtgtctgtgtctgtgtctgtgccattgtctgtgtctgattcctattccaattgcatttcatatgatttatttaatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAG
species | Glycine max |
transcript | GLYMA14G36540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|208120661|gb|GD916018.1|GD916018
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|120533350|gb|EH261483.1|EH261483
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|298196446|gb|HO041189.1|HO041189
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|192323797|gb|FK015608.1|FK015608
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|17400857|gb|BM177639.1|BM177639
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|151396530|gb|EV266407.1|EV266407
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|254340298|gb|GR858423.1|GR858423
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|254319588|gb|GR829100.1|GR829100
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: AGATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAEST: gi|16996929|gb|BM086301.1|BM086301
genomic: AGATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
gtctgtgtctgattcctattccaattgcatttcatatgatttatttaatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAG
atttaat putative branch site (score: 4)
tttattt CT-rich tract
aattgcatttcatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtctgtgtcattgtctgtgtctgtgtctgtgtctgtgccattgtctgtgtctgattcctattccaattgcatttcatatgatttatttaatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAG
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