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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttgaacatgcaacttggtttctcacgtgatattgtggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacattccgggttttaatttgattatttattgtaatttgtttcttgcagCGCTGTAAGTTTTCCTGAGCTACCCTATCGCAG

Basic information

species Glycine max
transcript GLYMA14G34160.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395786|gb|EV265663.1|EV265663
EST:     GAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAA                         CGCTGTAGGTTTTCCTGAGCTACCCTATCGCAG
genomic: GAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAAgtaagctttg ... tttcttgcagCGCTGTAAGTTTTCCTGAGCTACCCTATCGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatcacattccgggttttaatttgattatttattgtaatttgtttcttgcagCGCTGTAAGTTTTCCTGAGCTACCCTATCGCAG
                                         tttgtttctt  CT-rich tract
                 ttttaatttgattatt  TA-rich tract