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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG

Basic information

species Glycine max
transcript GLYMA14G24220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g66120.1 (Oryza sativa), 3'ss of exon 2
--ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatgattgctgacttaattt-tga--tgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
     |  ||||  || |   |   || | || ||  ||     ||  | |  ||||  |  || ||    ||||  ||| |||  |  |||   |||  ||||| ||||||| |||||||||||||| |||||||||||||| || |   | || ||||  |      |  |   |   | ||   | |   |     |   ||
aacaggcccttagttttgcact--tggtactttaatttttt---tttgagtgagtgtaaatttgtttctaaactttgtttatgaatttgttttgtattggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAGAAGCCGCCGGCCGCGGCGGTGGCGGCGGCGGGGATGGTGAGCAGCGGCG

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os11g08210.1 (Oryza sativa), 3'ss of exon 2
----ttcgttcttatc-ttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACA-ACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG-
        || ||| |   |    |  |    |||  | ||  |   |    ||   | |||  || ||| | |  ||  ||||| | | || |  ||||||||| ||||||| |||||| |||||||||| ||||||||||| || |  || || | | |  | ||      | |||    ||   ||  ||   |   |   || 
ccaaaaactttttaccaccaccactcgcatgcattccacatcaa---tcttgatcactttgctaataatttcagttttttttttggttaatttt--tttttgcagTTGGATGATTGGGTGTTGTGCCGAATCTACAACAAGAAGGGAGTGATCGAGAGGTACGACACGGTGGACGCCGGCGAGGA--CGTGAAGCCGGCGGCGGCGG

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g34830.3 (Oryza sativa), 3'ss of exon 1
ttcgttcttatcttagggatatcggaaattaaaaattg--aagattaaaatatg-tgtgcacatgattg---ctgacttaatttt-gatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG--
       | ||     |||| ||   |  ||   ||||    ||| |  | ||| | ||  | ||||      ||| || ||||| | || ||| || || |||||||| ||||| ||||| ||||||||||| |||||||||||||| |   | || ||||  | |    |  |  ||   | |  |     |||   |||  ||   
------ttaattgggcggatttcatcatatatttattgttgtgatcacgaaatgatatggtcttgatgaaatttgatttgatttttggtggtttgtg-ttattgcagCTAGATGATTGGGTCCTGTGCCGAATCTACAACAAGAAAGGCGGCGTGGAGAAGC--CGAGCGGCGGCGGCGGCGGCGAACGTTCGAATATGATGAGCCACG

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G123667_T01 (Zea mays), 3'ss of exon 3
ttcgttcttatcttagggatatcggaaattaaa-aattgaagattaaaatatgtgtgcacatg-attgctgac--ttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCA----ACAACTACCACCACCGA--GTGGGGTCCGCAAAATTGAATGTTCCG
          |  ||   | | |  ||       | |   |  ||  | |  |  | | | || ||||  | |  ||||   ||| |  |      | ||||||||||||||||||||||||||||| || ||||||||||| ||||  || ||   | |    |||     |  |  |||  | |  | |  |      |||       
---------gtagtaaaaaaaacccaatcagcttagtctgacttttcactgggatttcgcgtggattggcggcgcttaaccatgaagtgtctactgtcttgcagCTGGATGACTGGGTGCTGTGCCGGATCTACAACAAGAAGGGTGTTATCGAGCGGTACGACACAGTGGACGACGACGACGGCGACGGCGCCGTGGCCGAAG------

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G123667_T03 (Zea mays), 3'ss of exon 2
ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatg-attgctgac--ttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCA----ACAACTACCACCACCGA--GTGGGGTCCGCAAAATTGAATGTTCCG
    | | ||    |   |   |    |    |   |||   || |  |  |  | | | || ||||  | |  ||||   ||| |  |      | ||||||||||||||||||||||||||||| || ||||||||||| ||||  || ||   | |    |||     |  |  |||  | |  | |  |      |||       
--aatgcgtagtaaaaaaaacccaatcagcttagtctgacttttcac-tgggatttcgcgtggattggcggcgcttaaccatgaagtgtctactgtcttgcagCTGGATGACTGGGTGCTGTGCCGGATCTACAACAAGAAGGGTGTTATCGAGCGGTACGACACAGTGGACGACGACGACGGCGACGGCGCCGTGGCCGAAG------

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G123667_T06 (Zea mays), 3'ss of exon 1
ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatg-attgctgac--ttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCA----ACAACTACCACCACCGA--GTGGGGTCCGCAAAATTGAATGTTCCG
            | |   | | |  |       | |   |  ||  | |  |  | | | || ||||  | |  ||||   ||| |  |      | ||||||||||||||||||||||||||||| || ||||||||||| ||||  || ||   | |    |||     |  |  |||  | |  | |  |      |||       
-----------gtaaaaaaaacccaatcagcttagtctgacttttcactgggatttcgcgtggattggcggcgcttaaccatgaagtgtctactgtcttgcagCTGGATGACTGGGTGCTGTGCCGGATCTACAACAAGAAGGGTGTTATCGAGCGGTACGACACAGTGGACGACGACGACGGCGACGGCGCCGTGGCCGAAG------

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G180328_T01 (Zea mays), 3'ss of exon 2
----ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGC--AACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
        |  || |  ||    | |     ||  | |  |   |  |   ||  | |||   | ||||  |  | |   |  | |  ||| |   | |||||| ||||||| ||||||||||||||||| |||||||||||||| ||  | || ||||  | |     |  |  | | |  | | ||   |    |   |  |  
aaatcgtataattgttctacctttttgttggatggatagatttgg--tggtatgggcgtgattaagatttttttcct--ctcggttttttttttgctgttgcagTTGGATGATTGGGTGCTGTGCCGAATCTACAACAAGAAAGGCGCGCTGGAGAAGCCGACCGGAGCCGGCGGCAGGGCCGAGGCCAGCAGCCAGGGCGCGC--

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G014653_T02 (Zea mays), 3'ss of exon 1
-ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGC--AATTGAA--AAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
 || |   |     |   | | |  ||   |  |  |     |||          |||||  ||   |  ||| | || |      |  |||    ||||| ||||||||||||| |||||||| || ||||||||||| || |      || |  | ||  |  |  |  |  ||| | || | || |||   ||  |||||  
attagacatcgaaatgacgctttgtgattctttagctcatccatttctcgtcagctgcacg-gacgacaaactaagttctctattgtgttgacgggtgcagTTGGATGACTGGGTCCTGTGCCGCATCTACAACAAGAAGGGCGGCGGGCTGGAGAAGGCGGCGGCGCCGGCGGCCG-GCGGCGACCACAAGCCTG--TGTTCG-

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ36823 (Selaginella moellendorffii), 3'ss of exon 1
-----------------------------ttcgttct-tatcttagggatatcgg-aaattaaaaattgaagattaaaatatgtgtgcacatg-----------attgctgacttaattttga----tgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
                             |  || ||  || || |||| |     |||  |||||   || |  | |    | |  ||   |           |  | || |||| ||| |     || | |    |  ||||||||||| ||||||||||||||||| || ||||  |||||                                                              
gtaagtttcaattcctccaagtagttgcataagtcctgcatattggggaaaaaaacaaaaaaaaaaaaaaaaaagagagctcgagctcatgagtggtattaaaaaccgatggcttactttggcaagctgttcttctttcgttgcagCTGGACGACTGGGTGCTGTGCCGGATCTACAGAAAGAAGACA----------------------------------------------------------

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ38403 (Selaginella moellendorffii), 3'ss of exon 1
ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatg-tgtgcacatgattgctgactt-aattttgat-gatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
                                        | || |||   | ||   | ||| |  ||| |||  | | || | || |||   ||||| |||||||| ||||||||||| |||||||||||||| |||                                                                
----------------------------------------gtttgaaagccgctgactagatgttgactggctttgactatgtttgacttccatttttttcagCTGGACGACTGGGTGCTATGCCGAATTTACAAAAAG----------------------------------------------------------------

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ27849 (Selaginella moellendorffii), 3'ss of exon 1
------ttcgttcttatct--tagggatatcggaaattaaaaattgaagattaaaatatgtg---tgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
      |||  |     |   |||    |||      |  | ||||  ||  |||| |          | |  |      |   ||    ||    |  ||| |  |          ||  |  | || || | |  |            | ||||  ||       || |||       | | |  || ||  || ||  |||       
gtaagtttcaattcctccaagtagttgcatccagtcctgcatattggggaaaaaaacaaaaaaaacaaaaaaaaaaaaaaaagaaagagcgagagctcgtgagtggtattaaaaaccgatggcttactttggcaagct-gttcttctttcgttgcagCTGG------ACGACTG--GGTGCTGTGCCGGATCTACAGAAA-GAAGACA---

upper sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ31748 (Selaginella moellendorffii), 3'ss of exon 1
ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
                            || |||   |  || || |   ||  ||    ||| |      || | ||  |||        ||||| |||||||| |||||||||||||||||||||||||| |||||                                                              
--------------------------gtttgaaagccgctgactagatattgactgtttttgactat--gtttgacttccatg--------ttttttcagCTGGACGACTGGGTGCTGTGCCGAATTTACAAAAAGAAG-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575399|gb|CX548374.1|CX548374
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|16345042|gb|BI970637.1|BI970637
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|254319629|gb|GR830761.1|GR830761
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|20811782|gb|BQ296260.1|BQ296260
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACNACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|207791574|gb|GD763257.1|GD763257
EST:     TCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: TCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAA-GAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|11274388|gb|BF324741.1|BF324741
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATT-ACAACAAGAAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAA
EST: gi|21479914|gb|BQ576597.1|BQ576597
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|254319630|gb|GR830762.1|GR830762
EST:     ACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|15664353|gb|BI701724.1|BI701724
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|11413028|gb|BF425048.1|BF425048
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATNTACAACAAGAAAGGTGCAATTGAN
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|120534378|gb|EH262511.1|EH262511
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|120534166|gb|EH262299.1|EH262299
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|254322249|gb|GR837663.1|GR837663
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|213617798|gb|DB959382.1|DB959382
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCC
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCC
EST: gi|298163534|gb|HO012267.1|HO012267
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACA
EST: gi|208239607|gb|GE039127.1|GE039127
EST:     GGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: GGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|254320223|gb|GR829411.1|GR829411
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|13252458|gb|BG363369.1|BG363369
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAAG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|208145470|gb|GD940869.1|GD940869
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAA
EST: gi|213620404|gb|DB957301.1|DB957301
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|254314647|gb|GR829640.1|GR829640
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|213607698|gb|DB958717.1|DB958717
EST:     ATCGTCTTGCAGACTTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|213599829|gb|DB973887.1|DB973887
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCC
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCC
EST: gi|208111059|gb|GD913551.1|GD913551
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTG
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTG
EST: gi|208041435|gb|GD838643.1|GD838643
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATG-CTGGGTGCTGTG
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTG
EST: gi|8282623|gb|BE020184.1|BE020184
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|254343687|gb|GR857443.1|GR857443
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGG                         CTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA
EST: gi|10847892|gb|BF071632.1|BF071632
EST:     ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAATG                         CTGGATGACTGGGTGCTGGGCCCAATTTACAACAAGAAAGGTGCAATTGAA
genomic: ATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatattccc ... atttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatgtgtgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG
                                              tttttgc  CT-rich tract
                          ttaattttgatgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcgttcttatcttagggatatcggaaattaaaaattgaagattaaaatatgtgtgcacatgattgctgacttaattttgatgatttctgatttttgcagCTGGATGACTGGGTGCTGTGCCGAATTTACAACAAGAAAGGTGCAATTGAAAAGCAACAACTACCACCACCGAGTGGGGTCCGCAAAATTGAATGTTCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - -attaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac