1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcactacaatatagtttttgtttgactaaccccttttactcattgagttatgcatgctccaccatttattgatttatacctctaaaaattatgggtgtagGTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACCCTGAAAAAGGAACTAGCTGGGTTGCAGGATGAATTAGCACAAGCACACA
species | Glycine max |
transcript | GLYMA14G23860.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAG GTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACCEST: gi|209716515|gb|BW658951.1|BW658951
genomic: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAGgtttcaactg ... atgggtgtagGTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACC
EST: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAG GTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACCEST: gi|209726908|gb|BW675335.1|BW675335
genomic: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAGgtttcaactg ... atgggtgtagGTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACC
EST: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAG GTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACCEST: gi|20497795|gb|BQ272725.1|BQ272725
genomic: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAGgtttcaactg ... atgggtgtagGTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACC
EST: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAG GTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACC
genomic: ATTGGCGAGCTCGGCAAGATGTGCTAACAATCATGCACCTCCATGAAAAGgtttcaactg ... atgggtgtagGTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACC
agttatgcatgctccaccatttattgatttatacctctaaaaattatgggtgtagGTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACCCTGAAAAAGGAACTAGCTGGGTTGCAGGATGAATTAGCACAAGCACACA
ctctaaa putative branch site (score: 3)
atttattgatttatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactacaatatagtttttgtttgactaaccccttttactcattgagttatgcatgctccaccatttattgatttatacctctaaaaattatgggtgtagGTGGTCGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACCCTGAAAAAGGAACTAGCTGGGTTGCAGGATGAATTAGCACAAGCACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG