1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagttactttttttcccctactgaatacaatctgtaaaatctttggtatgtagtttgttatttacacttggattcaaacttaggtggttaactcacttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
species | Glycine max |
transcript | GLYMA14G22250.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTG GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTEST: gi|207765175|gb|GD735448.1|GD735448
genomic: GCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagttact ... acttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
EST: GCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTG GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTEST: gi|254332143|gb|GR845973.1|GR845973
genomic: GCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagttact ... acttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
EST: GCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTG GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTEST: gi|208323403|gb|GE123990.1|GE123990
genomic: GCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagttact ... acttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
EST: GCCAGATGGTAGACCACTTGGAAAAGCTAGNGAAACAAGTATTCTTCTTG GTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
genomic: GCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGgttagttact ... acttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
gtagtttgttatttacacttggattcaaacttaggtggttaactcacttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
aactcac putative branch site (score: 2)
ctcactt CT-rich tract
ttgttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttactttttttcccctactgaatacaatctgtaaaatctttggtatgtagtttgttatttacacttggattcaaacttaggtggttaactcacttgatcagGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA