Sequence
atgc intronic sequence ATGC exonic sequence...atgatagtttctagtgtttgaagaaaatcttcaaactcttggttcaattagccacagcaagtaaacatataaatgttctcacatgctgcatgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTCGATGGGGC
Basic information
species | Glycine max |
transcript | GLYMA14G13750.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G13750.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g08544.2 (Oryza sativa), 3'ss of exon 2
atgatagtttctagtgtttgaagaaaatcttcaaactcttggttcaattagcc---acagcaagtaaacatataaat-gttctcacatgctgcatgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTCGATGGGGC---
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--tttgtgctcggatttgtatcttaaagtctgatacttcttactgaaggggcctagatgatgttcggacaactgagttatgcttgtatgattggttctg--cagGGGCATCTCCTGGTGAAGGGACTGGAGCGACTATGTCTGATGATGAAGATAACCAAGTGGACAGTGAAGCCAACATGTTTGATGGAAAT---GATGGGTCAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13480317|gb|BG509660.1|BG509660EST: AGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAG GAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATG
genomic: AGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaa ... tgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattagccacagcaagtaaacatataaatgttctcacatgctgcatgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTCGATGGGGC
ttctcac putative branch site (score: 2)
aagtaaacatataaat TA-rich tract