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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgatagtttctagtgtttgaagaaaatcttcaaactcttggttcaattagccacagcaagtaaacatataaatgttctcacatgctgcatgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTCGATGGGGC

Basic information

species Glycine max
transcript GLYMA14G13750.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G13750.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g08544.2 (Oryza sativa), 3'ss of exon 2
atgatagtttctagtgtttgaagaaaatcttcaaactcttggttcaattagcc---acagcaagtaaacatataaat-gttctcacatgctgcatgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTCGATGGGGC---
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--tttgtgctcggatttgtatcttaaagtctgatacttcttactgaaggggcctagatgatgttcggacaactgagttatgcttgtatgattggttctg--cagGGGCATCTCCTGGTGAAGGGACTGGAGCGACTATGTCTGATGATGAAGATAACCAAGTGGACAGTGAAGCCAACATGTTTGATGGAAAT---GATGGGTCAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480317|gb|BG509660.1|BG509660
EST:     AGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAG                         GAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATG
genomic: AGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaa ... tgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattagccacagcaagtaaacatataaatgttctcacatgctgcatgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTCGATGGGGC
                              ttctcac  putative branch site (score: 2)
 aagtaaacatataaat  TA-rich tract