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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atacacttgtaattgtttgggaaattgattctcatgcctaacagaaactgtgtgtgtgtgtgcaagcgtgctaatataatttctatcaattttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAACGTTTCTCGGTTTGAAGGCATACCTATGGCGCCTCCTGATCCAATTCTAGGAGTTTCTGAGGCAT

Basic information

species Glycine max
transcript GLYMA14G13480.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G13480.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0008g06040.t01 (Vitis vinifera), 3'ss of exon 4
atacacttgtaattgtttgggaaattgattctcatgcctaacagaaactgtgtgtgt-gtgtgcaagcgtgctaatataatttctatcaatttt---gttt-cagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAACGTTTCTCGGTTTGAAGGCATACCTATGGCGCCTCCTGATCCAATTCTAGGAGTTTCTGAGGCAT
       ||   || | | |||  |  ||     ||   |  |  || | ||| ||| ||||    |  | || || ||| || |||  |||||   |||| ||||||   || |||||   ||||||| ||||||| ||    ||||| ||||||||  || | ||||| ||||||||||||||||| |||||||||||||| |
-----gatggtcttttataggatttaaataaatttggggaggatgaaatttgtatgtagtgtttttgtcttctgatctaagttttatttattttttggtttgcagTCTTTTGGCCGGATAAATATGGCTATTGCAGTCAATACCTCTCGTTTTGAAGGTGTAACAATGGCCCCTCCTGATCCAATTCTTGGAGTTTCTGAGGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgtgtgtgtgtgtgcaagcgtgctaatataatttctatcaattttgtttcagTCTAGAGGTCGGATCTCTATGGCTGTTGCAGTTAACGTTTCTCGGTTTGAAGGCATACCTATGGCGCCTCCTGATCCAATTCTAGGAGTTTCTGAGGCAT
                       tgctaat  putative branch site (score: 2)
                                            ttttgtttc  putative PPT
                          taatataatttctatc  TA-rich tract