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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttatatgctattggctatatataacctatactcaatattattctttttcagctaaaaatgtaaaaggtagctgaaactttcttgtttgaaactttcagGCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG

Basic information

species Glycine max
transcript GLYMA14G12220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G12220.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 3'ss of exon 3
agttatatgctattggctatatataa-cctatactcaata--ttattctttttcagctaaaaatgtaaaaggtagctgaaactttcttgtttgaaactttcagGCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG
    || |||   | || | ||||     ||   |  |||  |    |||     |  || | |  | || |     | |   |||| || ||    | ||||| ||||| |||||||| || ||||| ||||| || |||||||| ||||| ||||||||||| |||||||| ||||||||||| || ||||| || ||||
--ccatgtgccgctcgc-aaatatgggtttagctttgatagatcgagcttccaatgtcaatattagataatgcttgcgtattcttctggtatggttgtctcagGTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996560|gb|BM085932.1|BM085932
EST:     AATTGATGGTGTGGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATG                         GCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCA
genomic: AATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGgtatatttac ... aaactttcagGCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCA
EST: gi|213597178|gb|DB968217.1|DB968217
EST:     AATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATG                         GCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCA
genomic: AATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGgtatatttac ... aaactttcagGCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCA
EST: gi|6502191|gb|AW203564.1|AW203564
EST:     AATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATG                         GCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCA
genomic: AATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGgtatatttac ... aaactttcagGCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcagctaaaaatgtaaaaggtagctgaaactttcttgtttgaaactttcagGCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG
      agctaaa  putative branch site (score: 3)
                                                ctttc  putative PPT
         taaaaatgtaaaa  TA-rich tract