Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaccatgtccttagacattgtatataggcttcttcaccttgttccttgtcaatgaaaaaataaatcagtttgcatttttcacttaccctcgtttcttttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATAGGGAAACTTCACAGTTTGGTCTCTAT

Basic information

species Glycine max
transcript GLYMA14G11220.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11220.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------------------------gtgagtcaccatgtccttagacattgtatataggcttcttcacct-tgt-------tccttgtcaatgaaaaaataaatcagtttgcatttttcacttacc-ctcgtttcttttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATAGGGAAACTTCACAGTTTGGTCTCTAT
                                                          ||   | |  ||| | ||  |  |||||  |    |  | ||  | |||       | ||||| | |  |   |||     ||||  |||||| | ||     | |      ||  || ||||| |||||||||||||||||||| ||||| ||||||||||||||  | ||  |  |  |  ||||| |
gtaagccatgtcctcctgctctcttttcttttcttttctttttttgtctttcttgtttgtattttaaaatgccatttaattttgtaagttttgtaatccatgtatgtgattaaattcttgtaagtttattgatattcaggttttgattttttattttttatttgcaaacattttagTAATCTCTCAGGGTTGAATCTTGATGGGGAAATCTCACCTGCAATAGGAGATCTCAAGGGGCTACTCTCTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatgaaaaaataaatcagtttgcatttttcacttaccctcgtttcttttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATAGGGAAACTTCACAGTTTGGTCTCTAT
                               cacttac  putative branch site (score: 2)
                        catttttcacttaccc  CT-rich tract
      aaaaaataaatcagtt  TA-rich tract