1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattccttttcaatatatgttcaaattcatagtacctggatattatgtcccatttggctcttagctctatttttttcatttacttttaaaaatactgtagGAAATAGACTTTTGGGTGCTCAAGAGAGATTTCAATCTAGCTACCTTGGCAGTATTGCTCGTCGAGCACGTGATGCAGATGAAGCCGCTGAAGTTGCTTA
species | Glycine max |
transcript | GLYMA14G10950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAG GAAATAGACTTTTGGGTGCTCAAGAGAGATTTCAATCTAGCTACCTTGGCAEST: gi|208104142|gb|GD902705.1|GD902705
genomic: TGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAGgtataaattc ... aatactgtagGAAATAGACTTTTGGGTGCTCAAGAGAGATTTCAATCTAGCTACCTTGGCA
EST: TGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAG GAAATAGACTTTTGGGTGCTCAAGAGAGATTEST: gi|209714046|gb|BW684499.1|BW684499
genomic: TGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAGgtataaattc ... aatactgtagGAAATAGACTTTTGGGTGCTCAAGAGAGATT
EST: TGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAG GAAATAGACTTTTGGGTGCTCAAGAGAGATTTCAATCTAGCTA
genomic: TGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGCTTGGAGATCGTGCAGgtataaattc ... aatactgtagGAAATAGACTTTTGGGTGCTCAAGAGAGATTTCAATCTAGCTA
tgtcccatttggctcttagctctatttttttcatttacttttaaaaatactgtagGAAATAGACTTTTGGGTGCTCAAGAGAGATTTCAATCTAGCTACCTTGGCAGTATTGCTCGTCGAGCACGTGATGCAGATGAAGCCGCTGAAGTTGCTTA
ttagctctattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattccttttcaatatatgttcaaattcatagtacctggatattatgtcccatttggctcttagctctatttttttcatttacttttaaaaatactgtagGAAATAGACTTTTGGGTGCTCAAGAGAGATTTCAATCTAGCTACCTTGGCAGTATTGCTCGTCGAGCACGTGATGCAGATGAAGCCGCTGAAGTTGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - -tgtccca