Sequence
atgc intronic sequence ATGC exonic sequence...tttagggatttttttaatgtttttgtgagtagagtatatggtgatttacttgtattgcattcttggcatagaatttcaattgagttttgtgtttctgcagCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAA
Basic information
species | Glycine max |
transcript | GLYMA14G10520.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G10520.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G142984_T02 (Zea mays), 3'ss of exon 2
-tttagggatttttttaatgtttttgtgagtagagtatatggtgatttacttgtattgcattcttggcatagaatttcaattgagttttgtgtttctgcagCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAA
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atatgcttgtcttgttcttgaggttgttcctaaagtgtccactc-tctacatttgagatcctgatgtgctatactttttgttggttgtctacatattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTGTAAGCCCGCACTTGAGTCTGATCATATCACCA
upper sequence: GLYMA14G10520.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G25910.2 (Arabidopsis thaliana), 3'ss of exon 2
tttagggatttttttaatgtttttgtgagtagagtatatggtgatttacttgtattgcattcttggcatagaatttcaattgagttttgtgtttctgcagCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAA
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-----------gtgtgaccttttttt--gtatgatttattgt---ttacctctattggtcgtttataattcttactggagatcttgtcttggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGA
upper sequence: GLYMA14G10520.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 3'ss of exon 2
-tttagggatttttttaatgtttttgtgagtagagtatatggtgatttacttgtattgcattcttggcatag-aatttcaattgagttttgtgtttctgcagCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAA
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gttcaaaatctttgtcaaatgtttatccagttccttat-tacctattctgtgtcatgagattttcactttgataattatgaaagatttttat-ctttggcagATTGCTTTTCCAGATGCTATTTATCTGGTTGATGCTATTCAGGGGGGAGAGATGCTTATGAAAGCCTGTAAGCCTGCACTTGAATCTAGTTACATCACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326693|gb|FK018880.1|FK018880EST: ACTGCGAGGGCGTTGACCTGTGTCGCAAAGGCACTCTCTGCGTAATGCAG CTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAG
genomic: ACTGCGAGGGCGTTGACCTGTGTCGCAAAGGCACTCTCTGCGTAATGCAGgtccattcat ... gtttctgcagCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacttgtattgcattcttggcatagaatttcaattgagttttgtgtttctgcagCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAA
tgtttct CT-rich tract
atagaatttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttagggatttttttaatgtttttgtgagtagagtatatggtgatttacttgtattgcattcttggcatagaatttcaattgagttttgtgtttctgcagCTTGCATTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT