1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttccatgattctacttaattttgccaaatttatcatgttctctgacaatactattgtatcatgtatgagtatgattattttgggtttgtatgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGACTTTGTTAAGGTTGCCTTGGGGAAGATGAATCCACAGATTGCTTTCAT
species | Glycine max |
transcript | GLYMA14G09100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|151408508|gb|EV278316.1|EV278316
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|151398541|gb|EV268412.1|EV268412
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|37995730|gb|CF807319.1|CF807319
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACCAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|21255711|gb|BQ452599.1|BQ452599
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGATAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|21888088|gb|BQ741301.1|BQ741301
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|18726659|gb|BM523715.1|BM523715
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: GGAAAGGAGAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|16349133|gb|BI974728.1|BI974728
genomic: GGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGEST: gi|254348692|gb|GR852371.1|GR852371
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
acaatactattgtatcatgtatgagtatgattattttgggtttgtatgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGACTTTGTTAAGGTTGCCTTGGGGAAGATGAATCCACAGATTGCTTTCAT
ctctgac putative branch site (score: 3)
agtatgattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccatgattctacttaattttgccaaatttatcatgttctctgacaatactattgtatcatgtatgagtatgattattttgggtttgtatgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGACTTTGTTAAGGTTGCCTTGGGGAAGATGAATCCACAGATTGCTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG