Sequence
atgc intronic sequence ATGC exonic sequence...tagctataaggaaggtatttaagtttggtcctaaaattcatttcattaataaatgttttgcacaaaagtggaaatgtaacaacttaaatgtttgtcacagTGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGACCCTGTCTCTCTAATGCTGTGAAAGTTCAG
Basic information
species | Glycine max |
transcript | GLYMA14G07980.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G07980.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G19600.1 (Arabidopsis thaliana), 3'ss of exon 2
tagctataaggaaggtatttaagtttggtcctaaaattcatttcattaataaatgttttgcacaaaagtggaaatgtaacaacttaaatgtttgtcacagTGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGACCCTGTCTCTCTAATGCTGTGAAAGTTCAG
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------------gtctgttttgtcaaactgttaaattttgcttcttcctta------ttgggaagagttggt--tttgattggt--gttgtttcttttagTGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGTCTCTCGAGTGCTGTGAAGATTCAG
upper sequence: GLYMA14G07980.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g12750.t01 (Vitis vinifera), 3'ss of exon 2
--------tagctataaggaaggtatttaagtttggtcctaaaattcatttcattaataaatgttttgcacaaaag-tggaaatgtaacaacttaaatgtttgtcacagTGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGACCCTGTCTCTCTAATGCTGTGAAAGTTCAG
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gtgagcttcatatttcttctatataaatggactagctctttgacattttttcattgg-aattctggataataagtgctggaaatttattgac--actggtacatcacagTGTGTTTGCCTGGTTGATGCATTGGGCAATCGTACAATGCGGCCCTGTCTCTCAAGTGCTGTTAAGATTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8283366|gb|BE020927.1|BE020927EST: ATGGAGTTGACCTCTCTAGACTCAGAAAGAAGAAAGGACACACAGCACAG TGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGACCCTGTCTC
genomic: ATGGAGTTGACCTCTCTAGACTCAGAAAGAAGAAAGGACACACAGCACAGgtttgctcaa ... tttgtcacagTGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGACCCTGTCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaataaatgttttgcacaaaagtggaaatgtaacaacttaaatgtttgtcacagTGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGACCCTGTCTCTCTAATGCTGTGAAAGTTCAG
atgtaac putative branch site (score: 3)
ttaaatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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tagctataaggaaggtatttaagtttggtcctaaaattcatttcattaataaatgttttgcacaaaagtggaaatgtaacaacttaaatgtttgtcacagTGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGACCCTGTCTCTCTAATGCTGTGAAAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG