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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttttttggtttctttccgttgcttgttgtagctgaattgtgtgcttatatgattttttttttccaagcttaatgtgtattgtgtgtgtagATTGGGAAAGTGGTCCGCATACGTAAGGCTCCAAGGAATGGATCGCAGTCAAAGAGTGTGAGTGTGAGGAATAGCATAGCTTTGACTCCACATGAACGTG

Basic information

species Glycine max
transcript GLYMA14G07880.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135611|gb|BU926121.1|BU926121
EST:     AAGGAGCAGTTAATCTTGTGCTCGCTTACGCTGGATCCTCACCTTCTTTT                         ATTGGGAAAGTGGTCCGCATACGGTAATGTTCCAAGGAATGGATCGCAGTC
genomic: AAGGAGCAGTTAATCTTGTGCTCGCTTACGCTGGATCCTCACCTTCTTTTgtgtgttttt ... gtgtgtgtagATTGGGAAAGTGGTCCGCATAC-GTAAGGCTCCAAGGAATGGATCGCAGTC
EST: gi|298169292|gb|HO020652.1|HO020652
EST:     AAGGAGCAGTTAATCTTGTGCTCGCTTACGCTGGATCCTCACCTTCTTTT                         ATTGGGAAAGTGGACCGCATACGTAAGGCTCCAAGGAATGGATCGCAGTCA
genomic: AAGGAGCAGTTAATCTTGTGCTCGCTTACGCTGGATCCTCACCTTCTTTTgtgtgttttt ... gtgtgtgtagATTGGGAAAGTGGTCCGCATACGTAAGGCTCCAAGGAATGGATCGCAGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtgtgcttatatgattttttttttccaagcttaatgtgtattgtgtgtgtagATTGGGAAAGTGGTCCGCATACGTAAGGCTCCAAGGAATGGATCGCAGTCAAAGAGTGTGAGTGTGAGGAATAGCATAGCTTTGACTCCACATGAACGTG
                               gcttaat  putative branch site (score: 4)
         ttatatgatttttttt  TA-rich tract