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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatatatattatatgctttggttttgcttttaaggaaggtgtaggtgcatcttctttgatgattctgatgtttttatgtcatggttttgtagATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTCGGCTGTGGTGTAGCTAGTTTTGGCGCATACTTGTTGTCGCGAAATGTCA

Basic information

species Glycine max
transcript GLYMA14G07190.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07190.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S93_163V6.1 (Physcomitrella patens), 3'ss of exon 4
gttgatatatattatatgctttggttt--tgcttttaaggaaggtgtaggtgcatcttctttgatgattctgatgttt-------ttatgtcatgg------ttttgtagATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTCGGCTGTGGTGTAGCTAGTTTTGGCGCATACTTGTTGTCGCGAAATGTCA
||   ||   | || || | || || |  ||||   || | |  | ||     |   |  ||| |  | |  ||   |       | |    ||||      |  || ||||| | ||    ||    | |||||     | | | |||||||||||| |||||||||||||||| || || || || ||||||||    ||  |||| |
gtaagtagccaataaatacatttgtctggtgctcagaaaggaattttacagcaactattcttggttttgcaaattcctcccatgatcacaatatggagattctggtgcagATGCTACCCACCATCGGCTATGGGCGCCGGACACGTGTTGCTCTTGATATCGGCTGTGGTGTAGCCAGCTTCGGAGCCTACTTGTTTGATCGTGATGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401420|gb|EV271234.1|EV271234
EST:     GTACGCAATTTATACATGGAGCAGATCAATACTTAGACCATATTTCTGAG                         ATGGTTCCTGATATTAAGTTTGGGCAGAATATAATAGTTGCTCTTGATGTC
genomic: GTACGCAATTTATACATGGAGCAGATCAATACTTAGACCATATTTCTGAGgttgatatat ... ggttttgtagATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTC
EST: gi|7691852|gb|AW759971.1|AW759971
EST:     GTACGCAATTTATACATGGAGCAGATCAATACTTAGACCATATTTCTGAG                         ATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTC
genomic: GTACGCAATTTATACATGGAGCAGATCAATACTTAGACCATATTTCTGAGgttgatatat ... ggttttgtagATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTC
EST: gi|14126212|gb|BG790650.1|BG790650
EST:     GATCAATACTTAGACCATATTTCTGAG                         ATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTC
genomic: GATCAATACTTAGACCATATTTCTGAGgttgatatat ... ggttttgtagATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtaggtgcatcttctttgatgattctgatgtttttatgtcatggttttgtagATGGTTCCTGATATTAAGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTCGGCTGTGGTGTAGCTAGTTTTGGCGCATACTTGTTGTCGCGAAATGTCA
                         ttctgat  putative branch site (score: 3)
                              atgtttttat  TA-rich tract