1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatgcataactatgtatagaatagaatgacccagttttctctctctttttatctctttttttctttgccaacaaactaacttttcttgtttatttataaagGAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAG
species | Glycine max |
transcript | GLYMA14G07160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG GAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTEST: gi|15285417|gb|BI469308.1|BI469308
genomic: GCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGgtaatgcata ... atttataaagGAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCT
EST: GCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG GAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTEST: gi|192326275|gb|FK017622.1|FK017622
genomic: GCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGgtaatgcata ... atttataaagGAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCT
EST: GCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG GAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCT
genomic: GCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGgtaatgcata ... atttataaagGAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCT
ttttatctctttttttctttgccaacaaactaacttttcttgtttatttataaagGAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAG
aactaac putative branch site (score: 1)
cttttcttgtttattt CT-rich tract
aaactaacttttcttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcataactatgtatagaatagaatgacccagttttctctctctttttatctctttttttctttgccaacaaactaacttttcttgtttatttataaagGAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG