1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcgggattcacttttgtgtttctttgtactctgaggctgtgcactgctttactgttttgattaagggttctgatggattgtgttattctaaaccttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCCCATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGTTTCCTG
species | Glycine max |
transcript | GLYMA14G06780.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAG GTGCTTGAAGTTTT-CCACTTTGCTTGCACATCTGAEST: gi|213602108|gb|DB962601.1|DB962601
genomic: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAGgtcgggattc ... cttttcgcagGTGCTTGA-GTTTTTCCACTTTGCTTGCACATCTGA
EST: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAG GTGCTTGAGTTTTTCCACTTTGCEST: gi|26058993|gb|CA801907.1|CA801907
genomic: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAGgtcgggattc ... cttttcgcagGTGCTTGAGTTTTTCCACTTTGC
EST: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAG GTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTEST: gi|209715661|gb|BW674347.1|BW674347
genomic: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAGgtcgggattc ... cttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTT
EST: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAG GTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTEST: gi|192323035|gb|FK016766.1|FK016766
genomic: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAGgtcgggattc ... cttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTT
EST: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAG GTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTEST: gi|213605458|gb|DB966951.1|DB966951
genomic: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAGgtcgggattc ... cttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTT
EST: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAG GTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTT
genomic: TGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAGgtcgggattc ... cttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTT
ttactgttttgattaagggttctgatggattgtgttattctaaaccttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCCCATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGTTTCCTG
ttctaaa putative branch site (score: 2)
ccttttcgc CT-rich tract
ttttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgggattcacttttgtgtttctttgtactctgaggctgtgcactgctttactgttttgattaagggttctgatggattgtgttattctaaaccttttcgcagGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCCCATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGTTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA