Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaaatttaatcattttgtaaccagttttgaagggtattattttgaagactgatgtgaacctttttcatcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTCATTCTTATTCTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG

Basic information

species Glycine max
transcript GLYMA14G06170.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06170.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 3
------------------gtaagtga--aaatttaatca--ttttgtaaccagttttgaagggtattattttgaagactgatgtgaacctttttcatcctg--tatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTCATTCTTATTCTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG
                   |||   |  ||   | ||    |||  ||  | |||||   |     || ||  |    |  | |    || ||   |  ||  |  |||| || || || || ||||||||||| ||||| ||||| ||| | ||| | || || ||| |||||||| ||||||||||||| || |||||||||||||
gtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTGATCCTCATTTTGCGAAACAGGCTGAAGTATGCACTCACATACCGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601759|gb|BQ612090.1|BQ612090
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|18848488|gb|BM567686.1|BM567686
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|15337125|gb|BI497781.1|BI497781
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|6227935|gb|AW156597.1|AW156597
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|192299652|gb|FG987755.1|FG987755
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|298166678|gb|HO010117.1|HO010117
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGTGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|16996475|gb|BM085847.1|BM085847
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|192312625|gb|FK004313.1|FK004313
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|14125494|gb|BG789932.1|BG789932
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|209707198|gb|BW656816.1|BW656816
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|151412561|gb|EV282373.1|EV282373
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|209718729|gb|BW671930.1|BW671930
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|151396582|gb|EV266459.1|EV266459
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|193416877|gb|FK383689.1|FK383689
EST:     GCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|298186841|gb|HO033940.1|HO033940
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|7639605|gb|AW733924.1|AW733924
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|193519200|gb|FK474965.1|FK474965
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|14999877|gb|BI320691.1|BI320691
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|15201271|gb|BI424783.1|BI424783
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|207806319|gb|GD778796.1|GD778796
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|209705389|gb|BW668019.1|BW668019
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|17023171|gb|BM094205.1|BM094205
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|213614487|gb|DB972811.1|DB972811
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|6566530|gb|AW234173.1|AW234173
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|9204413|gb|BE330637.1|BE330637
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|213620181|gb|DB967496.1|DB967496
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCTTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|38192546|gb|CF921752.1|CF921752
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|13791604|gb|BG654195.1|BG654195
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|209703748|gb|BW665021.1|BW665021
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCT-CCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|209719323|gb|BW665933.1|BW665933
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|192301197|gb|FG988032.1|FG988032
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|4292392|gb|AI441898.1|AI441898
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|254319356|gb|GR828976.1|GR828976
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|15815361|gb|BI787636.1|BI787636
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|4314036|gb|AI461155.1|AI461155
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|192312626|gb|FK004314.1|FK004314
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|17023146|gb|BM094180.1|BM094180
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|151398495|gb|EV268366.1|EV268366
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|20813097|gb|BQ297567.1|BQ297567
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|11688388|gb|BF596064.1|BF596064
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|7042527|gb|AW472421.1|AW472421
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|213606507|gb|DB958989.1|DB958989
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|9205016|gb|BE331240.1|BE331240
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
EST: gi|192328145|gb|FK022854.1|FK022854
EST:     GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTAGGTGGTGCATTT                         GCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC
genomic: GGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgaagggtattattttgaagactgatgtgaacctttttcatcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTCATTCTTATTCTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG
                        gactgat  putative branch site (score: 3)
                                    cctttttcatcctgt  putative PPT
            tattattttgaaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgaaaatttaatcattttgtaaccagttttgaagggtattattttgaagactgatgtgaacctttttcatcctgtatagGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTCATTCTTATTCTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG