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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtgattgatttgctttgtgctctattgttcttaatatatatgttgtttttcaaccaaatagattgaatgtattactggggactgtgtgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAA

Basic information

species Glycine max
transcript GLYMA14G05810.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05810.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G04400.1 (Arabidopsis thaliana), 3'ss of exon 2
gtattgtgattgatttgctttgtgctctattgttcttaatatatatgttgtttttcaaccaaatagattgaatgtattactggggactgtgtgatt-ttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAA
     || |  || || |||| | |   | | |||||   | |      | |||         |   ||     || |  |||      | || || ||||| | || ||   ||| || |||| |||||||||||||||| | ||  |||| |||||| ||||||||||| |||| ||||| | |   ||  |  || |||
-----gtaaa-gactttctttttacaagacttttcttttcaga------gctttgt------gtgagtttttcttaatggtggttgtcttttggttcttcagATGAAGGAGCTAAATCCGCTTGACGTGCTGAAGAAAGCTGTAGAGGATGCTCCTCCTACTAGGGATTTTGTTGGGGCTCTTAGGATGGCTCATAAAAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207821781|gb|GD794808.1|GD794808
EST:     GACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
genomic: GACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
EST: gi|208137331|gb|GD937183.1|GD937183
EST:     TTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
genomic: TTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
EST: gi|193345406|gb|FK312971.1|FK312971
EST:     GAACATTTTGGAAGAGATTGTAGTGGAATAAGGACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
genomic: GAACATTTTGGAAGAGATTGT-GTGGAATAAGGACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
EST: gi|193437530|gb|FK403047.1|FK403047
EST:     GGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTAGAAGAAAGCTCTT
genomic: GGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCT-GAAGAAAGCTCTT
EST: gi|37995359|gb|CF806948.1|CF806948
EST:     GGAACATTTTGGATGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
genomic: GGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
EST: gi|193415389|gb|FK380993.1|FK380993
EST:     AACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
genomic: AACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
EST: gi|208145994|gb|GD943633.1|GD943633
EST:     AACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAACGCA
genomic: AACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
EST: gi|193649340|gb|FK598857.1|FK598857
EST:     TTGTGTGGAATAAGGACACAGAAGTCTCACAG                         CTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA
genomic: TTGTGTGGAATAAGGACACAGAAGTCTCACAGgtattgtgat ... tgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtttttcaaccaaatagattgaatgtattactggggactgtgtgattttcagCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAA
                                                ttttc  CT-rich tract
              aaatagatt  TA-rich tract