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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtattgcactactgctattgaatatgttagtaattaaatatatgcatatacataaaatatttcctttgaaacaatgcagTATGCTGTTGTGGATTACCTCTGGTATAGGAGTCTAAAGGGTGATAAAAATTCTCTTGGTTTCGATGTGATTGATAAATGGGGACGAATGCTCCCTGACC

Basic information

species Glycine max
transcript GLYMA14G05450.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208180919|gb|GD977116.1|GD977116
EST:     GTTTCTCAGCAGTTACTTGCTCATGGATATCAG                         TATGCTGTTGTGGATTACCTCTGGTATAGGAGTCTAAAGGGTGATAAAAAT
genomic: GTTTCTCAGCAGTTACTTGCTCATGGATATCAGgtactgtatt ... aacaatgcagTATGCTGTTGTGGATTACCTCTGGTATAGGAGTCTAAAGGGTGATAAAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagtaattaaatatatgcatatacataaaatatttcctttgaaacaatgcagTATGCTGTTGTGGATTACCTCTGGTATAGGAGTCTAAAGGGTGATAAAAATTCTCTTGGTTTCGATGTGATTGATAAATGGGGACGAATGCTCCCTGACC
      taattaaatatatgca  TA-rich tract