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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatgtcattcaatgattcttataccctttaggaaatgagacaattttatatttttgtaatcttcttatgtatgcattgcagTTGTGCAAGAGCCTCAGCAAGTTGTCTCTACCATCCCAAGCTTGTTTGGCTCATCTGATCTTGCTGACAAAGCAGAGGGATCATACGATGTGTTAGTGTG

Basic information

species Glycine max
transcript GLYMA14G05100.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532334|gb|EH260467.1|EH260467
EST:     CTTGAAAAGATTAGACCAGCAATGGTCAAGCATATGCTCCTCTCAAGAAG                         TTGTGCAAGAGCCTCAGCAAGTTGTCTCTACCATCCCAAGCTTGTTTGGCT
genomic: CTTGAAAAGATTAGACCAGCAATGGTCAAGCATATGCTCCTCTCAAGAAGgttcatgtca ... tgcattgcagTTGTGCAAGAGCCTCAGCAAGTTGTCTCTACCATCCCAAGCTTGTTTGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaggaaatgagacaattttatatttttgtaatcttcttatgtatgcattgcagTTGTGCAAGAGCCTCAGCAAGTTGTCTCTACCATCCCAAGCTTGTTTGGCTCATCTGATCTTGCTGACAAAGCAGAGGGATCATACGATGTGTTAGTGTG
               aattttatatttttgt  TA-rich tract