1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cattgtacatgctattcaatgaacctaaatcggaagttacagttaaaatctgttgctacagttgctcctctgaactatattataaattttgccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTGATCAAGCTGAAGGAAATTGTGACTGATACAG
species | Glycine max |
transcript | GLYMA14G04410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGG TTTCCTATAACTGCEST: gi|213617624|gb|DB969336.1|DB969336
genomic: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGgtatatcttt ... gccattgcagTTTCCTATAACTGC
EST: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGG TTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATEST: gi|193350783|gb|FK314133.1|FK314133
genomic: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGgtatatcttt ... gccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCAT
EST: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGG TTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATEST: gi|11275076|gb|BF325399.1|BF325399
genomic: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGgtatatcttt ... gccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCAT
EST: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGG TTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATEST: gi|208052340|gb|GD855235.1|GD855235
genomic: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGgtatatcttt ... gccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCAT
EST: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGG TTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATEST: gi|193694291|gb|FK630331.1|FK630331
genomic: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGgtatatcttt ... gccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCAT
EST: GTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGG TTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATEST: gi|19348210|gb|BM892742.1|BM892742
genomic: GTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGgtatatcttt ... gccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCAT
EST: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGG TTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCAT
genomic: GTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGgtatatcttt ... gccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCAT
aaatctgttgctacagttgctcctctgaactatattataaattttgccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTGATCAAGCTGAAGGAAATTGTGACTGATACAG
ttttgcc CT-rich tract
tctgaactatattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgtacatgctattcaatgaacctaaatcggaagttacagttaaaatctgttgctacagttgctcctctgaactatattataaattttgccattgcagTTTCCTATAACTGCCATACGAGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTGATCAAGCTGAAGGAAATTGTGACTGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - acatgct
- - - - - - - - -aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc