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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgatgaattgaaaccccctagcagtaacagagcttaatttgctttctaacaccttgtgtttttgttactttctgctttctaatgtatgattcatttccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCAG

Basic information

species Glycine max
transcript GLYMA14G04030.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715707|gb|BW674369.1|BW674369
EST:     ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCAGG                         GTAGGAGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
genomic: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatg ... ccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
EST: gi|151410923|gb|EV280738.1|EV280738
EST:     ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATG                         GTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
genomic: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatg ... ccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
EST: gi|151406081|gb|EV275896.1|EV275896
EST:     ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATG                         GTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
genomic: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatg ... ccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtgtttttgttactttctgctttctaatgtatgattcatttccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCAG
                         ttctaat  putative branch site (score: 2)
                                      ttcatttccattccc  putative PPT
       tttttgtta  TA-rich tract