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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttctattcttttttttaatgatatcgtgatgcttatgtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatgaaatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggttgatgtggcagGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCTCGACAGGTTGAAACGGAGTTCTGTGAGTCGGCACCTAATTTGGATACA

Basic information

species Glycine max
transcript GLYMA14G03760.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagttctattcttttttttaatgatatcgtgatgcttatgtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatgaaatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggtt---gatgtggcagGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCTCGACAGGTTGAAACGGAGTTCTGTGAGTCGGCACCTAATTTGGATACA
                                                                                   |||   | |  |||  |  |||     ||  ||  |   ||| |||     |  || || ||||  | | | |    | |||| |||||||   ||||||  || || |||||| ||||  |   |||||||||||| ||||| |||||||||||||| |||||||| | ||||||  | ||||| || || |  |||||||| 
-----------------------------------------------------------------------------------gtttgtgttt-actgagtcatt-----tgaggttcagagaattatgt---tttctggttggtttactgatttt-tggggttttatgtggtttttgatgtgatagACGAGGGAGGAATCCGCTTTGTTTGGTTTTGGCACCGACAAGAGAGCTTGCTCGCCAGGTTGAGAAGGAGTTTAGGGAGTCTGCTCCGAGCTTGGATACT

upper sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G22310.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagttctattcttttttttaatgatatcgtgatgcttatgtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatga-aatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggtt-gatgtggcagGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCTCGACAGGTTGAAACGGAGTTCTGTGAGTCGGCACCTAATTTGGATACA
                                                                                                  |    |   || || | |  || |  |||||     ||   ||  | |    |  || ||    || | ||||  || |||||| ||| || |||| | |||||  |   ||||||||||| ||||| || ||||||||||| |||||||| |  |||||| | || || || || | ||||||||| 
--------------------------------------------------------------------------------------------------gtttgtgtttactgttatatataacgatcatttgtgattgagagatttgcacttcctttggttcttatgttgtcttttgatgtgacagTCGTGGGAAGAATCCTCAGTGCTTGGTTTTGGCACCGACGAGGGAGCTTGCTCGTCAGGTTGAGAAAGAGTTCAGGGAATCTGCTCCAAGTTTGGATACT

upper sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 2
gttagttctattcttttttttaatgatatcgtgatgcttatgtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatgaaatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggttgatgtgg-cagGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCTCGACAGGTTGAAACGGAGTTCTGTGAGTCGGCACCTAATTTGGATACA
    |||   || |||  |  | | | |   ||||            | ||   || ||||| || |||  |||| |  |    || |   ||   |  |  ||    | |||    |  || ||||  | || | ||| |   ||| |||   |   ||  |||||| || ||  |     ||| || |||||| |||| ||||| |||||||||||||| || ||||| ||||| || || || || | ||| |||||||| || || || ||||||||||||
----gtttgtttgtttactccagtaacact-tgat------------ccattggttcaatttttacctt--ttctttttgaagattgattatgtgttctgttataa--aatggaacag--gacatcaatgcaatttttggtc--tttattattggcataatattttttatgttttgtacaaacagACGTGGGAGGAATCCGTTGGCCTTGGTTTTGGCTCCAACAAGAGAACTTGCACGGCAAGTGGAGAAGGAATTCTGTGAATCTGCCCCCAATTTGGATACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619469|gb|DB967743.1|DB967743
EST:     TTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGG                         GCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTC
genomic: TTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGgttagttcta ... gatgtggcagGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTC
EST: gi|209699422|gb|BW664142.1|BW664142
EST:     TTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGG                         GCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAG
genomic: TTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGgttagttcta ... gatgtggcagGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaatattgatttgttttttaactgtgcaagtttttttgtggttgatgtggcagGCGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCTCGACAGGTTGAAACGGAGTTCTGTGAGTCGGCACCTAATTTGGATACA
     tattgatttgtttttt  TA-rich tract