Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttattgttcatctctatttcaaatgttgtttattcgtattcgtactaattcaataataaaatgcaatcttttctatttctgaaaacgttggccattaatcactttatagttattattattgacaatgtcaatgttaattgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCTAGCCATCAATGAG

Basic information

species Glycine max
transcript GLYMA14G03380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180231|gb|HO025446.1|HO025446
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298178388|gb|HO024123.1|HO024123
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298176066|gb|HO015471.1|HO015471
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAGAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|18690771|gb|BM519619.1|BM519619
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298186560|gb|HO037193.1|HO037193
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAAAGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|7590453|gb|AW706205.1|AW706205
EST:     TGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: TGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|193499837|gb|FK464754.1|FK464754
EST:     CGCGTGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAAGTGC
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAA-GTGC
EST: gi|298173141|gb|HO020125.1|HO020125
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|14259659|gb|BG882567.1|BG882567
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298186019|gb|HO031180.1|HO031180
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298176384|gb|HO023085.1|HO023085
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298178730|gb|HO024465.1|HO024465
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298193450|gb|HO033884.1|HO033884
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGGCAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298185614|gb|HO030827.1|HO030827
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|192319176|gb|FK009116.1|FK009116
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGTAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|14259368|gb|BG882276.1|BG882276
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|193442335|gb|FK407334.1|FK407334
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCA
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGT-ATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCA
EST: gi|19053812|gb|BM732479.1|BM732479
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298190320|gb|HO032441.1|HO032441
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGTAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298174887|gb|HO014804.1|HO014804
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|208182844|gb|GD986946.1|GD986946
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|151404556|gb|EV274370.1|EV274370
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298190823|gb|HO032944.1|HO032944
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAATAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|213606515|gb|DB958997.1|DB958997
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|208178558|gb|GD977055.1|GD977055
EST:     CCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298167185|gb|HO010624.1|HO010624
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298179498|gb|HO027969.1|HO027969
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|193649046|gb|FK597513.1|FK597513
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|213606584|gb|DB972519.1|DB972519
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|8827796|gb|BE211526.1|BE211526
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|16343137|gb|BI968732.1|BI968732
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|193700425|gb|FK635054.1|FK635054
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGTT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|213593001|gb|DB969855.1|DB969855
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298184153|gb|HO029366.1|HO029366
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|6566138|gb|AW233777.1|AW233777
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|208185248|gb|GD981608.1|GD981608
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298179381|gb|HO027852.1|HO027852
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298166773|gb|HO010212.1|HO010212
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|13477996|gb|BG507649.1|BG507649
EST:     GTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: GTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|20815207|gb|BQ299685.1|BQ299685
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|151407956|gb|EV277771.1|EV277771
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|192333806|gb|FK025067.1|FK025067
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298194938|gb|HO043410.1|HO043410
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|31462597|gb|CD404625.1|CD404625
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|192311868|gb|FK004513.1|FK004513
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|192311867|gb|FK004512.1|FK004512
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298191318|gb|HO038797.1|HO038797
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298180711|gb|HO022150.1|HO022150
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|193619369|gb|FK571237.1|FK571237
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298199015|gb|HO042378.1|HO042378
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298183906|gb|HO029119.1|HO029119
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|207758863|gb|GD732186.1|GD732186
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|207786059|gb|GD756184.1|GD756184
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|19053708|gb|BM732375.1|BM732375
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGTTTTATTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298188212|gb|HO034905.1|HO034905
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAGATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|12691345|gb|BG157681.1|BG157681
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|151399793|gb|EV269664.1|EV269664
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
EST: gi|298165598|gb|HO011647.1|HO011647
EST:     CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTG                         GTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT
genomic: CGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttat ... attgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattaatcactttatagttattattattgacaatgtcaatgttaattgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCTAGCCATCAATGAG
     aatcactttatagtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtttattgttcatctctatttcaaatgttgtttattcgtattcgtactaattcaataataaaatgcaatcttttctatttctgaaaacgttggccattaatcactttatagttattattattgacaatgtcaatgttaattgttacagGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCTAGCCATCAATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA