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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcttacattttaattctcctatcactaaattaattgctataacataatgctcctccacaaggtttctctaactgctcgacactatttatcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAG

Basic information

species Glycine max
transcript GLYMA14G03100.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208229571|gb|GE020868.1|GE020868
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|193304745|gb|FK272230.1|FK272230
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|208097046|gb|GD894699.1|GD894699
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACG
EST: gi|208272616|gb|GE067942.1|GE067942
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGGGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|208309977|gb|GE109747.1|GE109747
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCCG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|193521334|gb|FK480375.1|FK480375
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgctcctccacaaggtttctctaactgctcgacactatttatcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAG
                      ctctaac  putative branch site (score: 2)
 actatttatcaata  TA-rich tract