1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatatggaattttgctcatggagaacggttaacaccatcttttcttgttaccctttgcgttaaagtttctaaattttaccctttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTGAAACCAAG
species | Glycine max |
transcript | GLYMA14G02500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAG TGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTEST: gi|11413203|gb|BF425214.1|BF425214
genomic: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAGgtaaatatgg ... ttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGT
EST: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAG TGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTEST: gi|6071672|gb|AW101059.1|AW101059
genomic: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAGgtaaatatgg ... ttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGT
EST: TTCTTCTTGGAGAG TGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTEST: gi|19452462|gb|BM953872.1|BM953872
genomic: TTCTTCTTGGAGAGgtaaatatgg ... ttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGT
EST: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAG TGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTEST: gi|9205432|gb|BE331656.1|BE331656
genomic: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAGgtaaatatgg ... ttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGT
EST: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAG TGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTEST: gi|151406689|gb|EV276504.1|EV276504
genomic: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAGgtaaatatgg ... ttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGT
EST: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAG TGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGT
genomic: GCGCCGGGGAGCCTCCCCTCACATTCCTCGACTCACTTCTTCTTGGAGAGgtaaatatgg ... ttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGT
tcttttcttgttaccctttgcgttaaagtttctaaattttaccctttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTGAAACCAAG
ttctaaa putative branch site (score: 2)
ttttaccctttcat CT-rich tract
ttaaagtttctaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatggaattttgctcatggagaacggttaacaccatcttttcttgttaccctttgcgttaaagtttctaaattttaccctttcatggcagTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTGAAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA