1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaactaacttcattcagcttttcatctgtgtcacttaagatgcgaatgctctacagaataatgggataaattaattacattttctttattcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC
species | Glycine max |
transcript | GLYMA14G02180.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCTCTTCTTGGAGAAAACACATGTGGTTCTTTGTTAAAAAAGCTTCAG GAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTEST: gi|207808912|gb|GD780806.1|GD780806
genomic: ATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAGgtaactaact ... ttcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTT
EST: ATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAG GAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTEST: gi|213601686|gb|DB972408.1|DB972408
genomic: ATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAGgtaactaact ... ttcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTT
EST: ATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAG GAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTT
genomic: ATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAGgtaactaact ... ttcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTT
gaatgctctacagaataatgggataaattaattacattttctttattcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC
aattaat putative branch site (score: 3)
ttttctttattcgct putative PPT
aataatgggataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaacttcattcagcttttcatctgtgtcacttaagatgcgaatgctctacagaataatgggataaattaattacattttctttattcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA