Sequence
atgc intronic sequence ATGC exonic sequencegtcaggcactctacttgcatagtttttactatgatgtgatttgtttttgtggctacagtcttgtttctttgctgaatttgttgacaaattgaggggtggcctttgattcaaattacttgatagagatgcagGTACAGGTGGGAATCCACTTTTGGGGGAACAAGCTGCGGAGGAATCCAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTATTTATAACGGC
Basic information
species | Glycine max |
transcript | GLYMA14G02110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02110.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G55280.1 (Arabidopsis thaliana), 3'ss of exon 2
gtcaggcactctacttgcatagtttttactatgatgtgatttgtttttgtggctacagtcttgtttctttgctgaatttgttgacaaattgaggggtggcctttgattcaaattacttgatagagatgcagGTACAGGTGGGAATCCACTTTTGGGGGAACAAGCTGCGGAGGAATCCAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTATTTATAACGGC
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------------------------------gttagtagagttatactatta--tttggtatagatgttgtg-tgagtt--ttggcacttaaagtaacaaacttgcgtctctgttacttgttttaa---tagGCACTGGTGGAAACCCGCTTCTTGGAGAACAAGCTGCAGAAGAATCAAAAGATGCAATTGCTAATGCTCTTAAAGGATCAGACCTTGTTTTCATAACTGC
upper sequence: GLYMA14G02110.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0090g01320.t01 (Vitis vinifera), 3'ss of exon 2
gtcaggcactctacttgcatagtttttactatgatgtgatttgtttttgtggctacagtcttgtttctttgctgaatttgttgacaaattgaggggtggcctttgattcaaattacttgatagagatgcagGTACAGGTGGGAATCCACTTTTGGGGGAACAAGCTGCGGAGGAATCCAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTATTTATAACGGC
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---------------------------acttttatatgggt-ggtatagctgcttttgtttt-cttatgtgttgaggaccttgt--ggttgtattgtatcctttgactcaaaccacttaatagagatgcagGTACGGGTGGGAATCCACTTTTGGGGGAACAGGCTGCTGAGGAATCAAAGGAAGCCATTGCAAATGCTCTCAAGGGTTCAGATCTTGTGTTTATAACAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24135378|gb|BU925879.1|BU925879EST: TGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAG GTACAGGTGGGAATCCACTTTTGGGGGAACAAGCTGCGGAGGAATCCAGAG
genomic: TGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAGgtcaggcact ... agagatgcagGTACAGGTGGGAATCCACTTTTGGGGGAACAAGCTGCGGAGGAATCCAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgttgacaaattgaggggtggcctttgattcaaattacttgatagagatgcagGTACAGGTGGGAATCCACTTTTGGGGGAACAAGCTGCGGAGGAATCCAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTATTTATAACGGC
tttgattcaaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaggcactctacttgcatagtttttactatgatgtgatttgtttttgtggctacagtcttgtttctttgctgaatttgttgacaaattgaggggtggcctttgattcaaattacttgatagagatgcagGTACAGGTGGGAATCCACTTTTGGGGGAACAAGCTGCGGAGGAATCCAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTATTTATAACGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT