Sequence
atgc intronic sequence ATGC exonic sequence...tctccaacctgatgaactagtcttttgagttggactttcctcttatgcttaagtcataacagtatcagccttaagattgtccctatgattgattgcgcagGCTCTAGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTACGGGT
Basic information
species | Glycine max |
transcript | GLYMA14G01780.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G01780.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g11660.1 (Oryza sativa), 3'ss of exon 2
-tctccaacctgatgaactagtcttttgagttggactttcctcttatgcttaagtcataacagtatcagccttaagattgtccctatgattgattgcg----cagGCTCTAGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTACGGGT
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tcatgttgtttggtaatttcggttcctatgatg-----ttgttatatactaacaaccgtatatcatatcctttatatttgatcctggaactcttgtcattaccagGCTCTGGAATCTGGTGATCTTCTCTGTGGTGGTACAGTAACAGAGGGGAGTGCTGGAAGCACAGCTATTAGCTTGGCCATTGTTGCTCCTGCTTATGGCT
upper sequence: GLYMA14G01780.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 3
---tctccaacctgatgaactagtcttttgagttggactttcctcttatgcttaagtcataacagtatcagccttaag-attgtc-cctatgattgattgcgcagGCTCTAGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTACGGGT
| || | | ||||||| || ||||| | | || | | |||| || | || || ||||| ||| || | ||||||| ||||||||||||||| |||||||||| |||| || ||||| |||||||| ||||||||||||||| |||| ||||| |||||||| || || |
tttttgataattccacgc-ctagtctctt-agttgttttgtgctgtcctagttaa-ctattctgttttctttgttgctcattgttacctgtggcca--tataaagGCTCTGGAATCTGGCCAGCTAGCTCCAGGTGGAGTAGTGACAGAAGGCAGTGCTGGTAGCACTGCCATTAGCCTTGCTACTGTGGCTCCTGCATATGGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttaagtcataacagtatcagccttaagattgtccctatgattgattgcgcagGCTCTAGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTACGGGT
ttaagatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctccaacctgatgaactagtcttttgagttggactttcctcttatgcttaagtcataacagtatcagccttaagattgtccctatgattgattgcgcagGCTCTAGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTACGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG