1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgtttataataaaaacaattctatttgtttctttgtatttttatttaaaaatatagaaaaaggatattaaccttgttctggttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTACCCAAGTACCTGGCTGA
species | Glycine max |
transcript | GLYMA14G00760.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCAGTTATCTGCACTACCGTTAACAAAGNTTGTGCATCAGGAATGAAAG CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTGEST: gi|19052939|gb|BM731606.1|BM731606
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAG CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTGEST: gi|193384949|gb|FK351921.1|FK351921
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: GTTAACAAAGTTTGTGCATCAGGAATGAAAG CTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTGEST: gi|192329988|gb|FK021574.1|FK021574
genomic: GTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAG CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTGEST: gi|37993878|gb|CF805624.1|CF805624
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAG CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
tatttttatttaaaaatatagaaaaaggatattaaccttgttctggttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTACCCAAGTACCTGGCTGA
tattaac putative branch site (score: 1)
ttatttaaaaatatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttataataaaaacaattctatttgtttctttgtatttttatttaaaaatatagaaaaaggatattaaccttgttctggttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTACCCAAGTACCTGGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG