1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgtttttatgaaaaatgaaaaaatattattacttgcacgtctcaacaaatatactaacattgtttacctatgggattattgacgaattaaattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATT
species | Glycine max |
transcript | GLYMA13G44950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGANNCATAGACAAAGATGGTTEST: gi|17519294|gb|BM188336.1|BM188336
genomic: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTEST: gi|308222709|gb|HO760619.1|HO760619
genomic: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTEST: gi|8284521|gb|BE022089.1|BE022089
genomic: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: AGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTEST: gi|308098300|gb|HO760041.1|HO760041
genomic: AGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTEST: gi|16348295|gb|BI973890.1|BI973890
genomic: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: AATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTEST: gi|6847895|gb|AW350185.1|AW350185
genomic: AATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: CCAGATTATGAAAG GTNATNTAAATGATGGAGAGGCTACAGAGAG-NCNCATAGACAAAGATGGTEST: gi|151407066|gb|EV276881.1|EV276881
genomic: CCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAAC-CATAGACAAAGATGGT
EST: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTEST: gi|21677924|gb|BQ630275.1|BQ630275
genomic: CAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: AGAAACTCACTCCGGCGAAATTTGCATACGAGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTEST: gi|58024891|gb|CX711632.1|CX711632
genomic: AGAAAC-CAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
EST: AGAAACC-ATCCGGTGAAATTTGCAT-AGAGGGCGACCAGATTATGAAAG GTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
genomic: AGAAACCAATCCGGTGAAATTTGCATAAGA-GGCGACCAGATTATGAAAGgtacccttgt ... aattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTT
acaaatatactaacattgtttacctatgggattattgacgaattaaattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATT
aattaaattgaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtttttatgaaaaatgaaaaaatattattacttgcacgtctcaacaaatatactaacattgtttacctatgggattattgacgaattaaattgaacagGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATT
- - - - - gaaaaat
- - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - cttgcac
- - - - - - - - - - - - - - - - - - - - -ctcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca