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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcctttcaatagttactttttgttatgtttctgcatgttttgtttgtgattccttttaaattctgtaagcataacatgccatttttcttcatttgcagGGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAG

Basic information

species Glycine max
transcript GLYMA13G44910.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040649|gb|BM308934.1|BM308934
EST:     ACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATG                         GGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAG
genomic: ACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggtttt ... tcatttgcagGGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgattccttttaaattctgtaagcataacatgccatttttcttcatttgcagGGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAG
                         gcataac  putative branch site (score: 3)
                                   ccatttttcttcattt  putative PPT
          ttttaaattctgtaa  TA-rich tract