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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcattgcatgtcgattgaatcttatgcatgaaaaaaatatcgattatttcttgctttaaggatatacttgaagttgaactgttgttcagtgtggttaatgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG

Basic information

species Glycine max
transcript GLYMA13G44000.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44000.2 (Glycine max), 3'ss of exon 1
lower sequence: AT3G15660.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgcattgcatgtcgattgaatcttatgcatgaaaaaaatatcgattatttcttgctttaaggatatacttgaagttgaactgttgttcagtgtggttaatgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG
           ||  | |  | ||| |  |      || |   || | ||||||   ||| |  | | ||   | |    |||||  | ||  | | |  | |||| ||||||| |||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||| ||||| || || || || ||||| || || |||||| 
-----------gtacactccagcttctctagatttgaagt--tgaatgtttctt-tgttaggtgtttgct---aat---gctgtt--ttagctttggtggt-tgtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170152|gb|HO018776.1|HO018776
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|298174489|gb|HO014634.1|HO014634
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|17154054|gb|BM143987.1|BM143987
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|151403951|gb|EV273761.1|EV273761
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|298182900|gb|HO028113.1|HO028113
EST:     CTAGTAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|17153892|gb|BM143825.1|BM143825
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|192323236|gb|FK017402.1|FK017402
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|192329314|gb|FK020233.1|FK020233
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|151397263|gb|EV267136.1|EV267136
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|13562443|gb|BG550663.1|BG550663
EST:     CTAATAAACTTGAGAATTCCAACATTACTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|31464055|gb|CD406083.1|CD406083
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|151410513|gb|EV280328.1|EV280328
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|9203815|gb|BE330039.1|BE330039
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|192306124|gb|FG996570.1|FG996570
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|298190798|gb|HO032919.1|HO032919
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|193689192|gb|FK631403.1|FK631403
EST:     GGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: GGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|208216921|gb|GE011215.1|GE011215
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|14012002|gb|BG726924.1|BG726924
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|10232984|gb|BE801872.1|BE801872
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|192306123|gb|FG996569.1|FG996569
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|18039188|gb|BM307482.1|BM307482
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
EST: gi|17021277|gb|BM092311.1|BM092311
EST:     CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAACTTGAGAATTCCAACATTTCTTTGGCTGATGTTATTGAGCAGgtgcattgca ... atgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttaaggatatacttgaagttgaactgttgttcagtgtggttaatgtgtgcagGATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG
                                        ggttaat  putative branch site (score: 4)
         atatactt  TA-rich tract