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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcctgcttttgtctttgtctttacctctctccttttcatggatacccttctaagcggttgcagctgcactctatagtcactaactaaacataacatggcaatgcatattcacacgttttattccaagtccaccatacccttcttcttctgggtataaaggggcatcactatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGCGGGGTGGGAGTGCTTTCAACACTTTCTCTTCAACCAGCAAAATGAGTCATGCACATTCTCATATG

Basic information

species Glycine max
transcript GLYMA13G43990.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43990.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 1
gtttcctgcttttgtctttgtctttacctctctccttttcatggataccct-------------tctaagcggttgcagctgcactctatagtcactaactaaacataacatggcaatgcatattcacacgttttattccaagtccaccatacccttcttcttctgggtataaaggggcatcactatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGCGGGGTGGGAGTGCTTTCAACACTTTCTCTTCAACCAGCAAAATGAGTCATGCACATTCTCATATG
     ||||||||||| ||||||||||||||  ||||||||||||| | ||             |||| |||||| |||   || | | |||    |    | ||| | ||| |   |||||||||| | |||||||||||  | |||| ||||      | | || |||||||      |    ||  ||  ||||||||||||||| ||||||||||| ||||| || | |  |  | |      ||    |||   |    | |     | | | |    ||| | || |     ||||      
---gtctgcttttgtccttgtctttacctct--ccttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtg--cacaca-agcatagtgttgcatattcatatgttttattccattttcaccctacc------catttgtgtataaatacagtttctcattttgggttttcttcattgcagTACCTCTTCATATTCATTACAATAGGTG-GCCTCTTTACTGCACTTGC--CCGGTCCGTGACGATGAGCTACTCTAATCATTC-TATGGGTTCTG-----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcttcttctgggtataaaggggcatcactatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGCGGGGTGGGAGTGCTTTCAACACTTTCTCTTCAACCAGCAAAATGAGTCATGCACATTCTCATATG
                                 tcctgcattttcttc  CT-rich tract
                                       attttctt  TA-rich tract