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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtgctaaagtgaaagctacatggttttgatgatgggtctgattttggctcatgtttctgcaccctttgtaatgatttttttaaattatctactgtagGGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTC

Basic information

species Glycine max
transcript GLYMA13G43830.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43830.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g05250.t01 (Vitis vinifera), 3'ss of exon 2
tgtgtgctaaagtgaaagctacatggttttgatgatgggtctgattttggctcatgtttct-gcaccctttgtaatgatttttttaaattatcta------ctgtagGGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTC
      ||  | |   |  | | |  || |     | |||   ||||    |     || | |||  | ||| |    | ||||  || |||||        | |||||||| ||||||||||| || ||||||||||||||||| ||||| || || |||||||  || |||| | | ||||||||||||   ||||| ||| |||
-----actgtaatttgatgttctt--ttctatcccttggttgcatttaacatgggacttgtagcattccttgaagatttattttctaactatctgattcatttctagGGGGTAGTTTATTGGCAACCACCCAAGCAAGCATTGGAGAAAGTAAAGGACCTTGTATGGGAACCTTCAGTCAGTCGTTATGGTGCTGATGATGGTCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268906|gb|CA819969.1|CA819969
EST:     ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAG                         GGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAGgttttttttt ... tctactgtagGGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggctcatgtttctgcaccctttgtaatgatttttttaaattatctactgtagGGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTC
                      tttgtaatgatttttt  TA-rich tract