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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctatatcttcaacttcaatccttttctctcctaatgttaattgaatttcctattactagtagtatcatctcatgtaattgttgttcatctttcttcagATAGATCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTTCCAG

Basic information

species Glycine max
transcript GLYMA13G43270.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725282|gb|BW672759.1|BW672759
EST:     GGATTGCAAAGGTTTTGCACTGAGCATAAGATTAAGTTATCAAAG                         ATAGATCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTT
genomic: GGATTGCAAAGGTTTTGCACTGAGCATAAGATTAAGTTATCAAAGgtatgctata ... ctttcttcagATAGATCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcctattactagtagtatcatctcatgtaattgttgttcatctttcttcagATAGATCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTTCCAG
                                     ttgttcatctttcttc  CT-rich tract
       tattacta  TA-rich tract