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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgcctgtccgcgcagtctctcagattcaaatgatccttggttatatttatctccttttccaatttgtttcttgtgtttacttcacacttcacagtcacagactaattcacatgtttgcttgtgtttgataacagACGGTTAATAGTCGAAGTCTTGATTATTCACACTTCATATCCCTTCCATTGGCCATTCATCCTGAGTTAGTTGATAAACTCATCAATTTTCAACATTCAA

Basic information

species Glycine max
transcript GLYMA13G43240.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43240.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G16230.2 (Arabidopsis thaliana), 3'ss of exon 8
gtttgttgcctgtccgcgcagtctctcagattcaaatgatccttggttatatttatctccttttccaatttgtttcttgtgtttacttcacacttcacagtcacagactaattcacatgtttgcttgtgtttgataacagACGGTTAATAGTCGAAGTCTTGATTATTCACACTTCATATCCCTTCCATTGGCCATTCATCCTGAGTTAGTTGATAAACTCATCAATTTTCAACATTCAA
                 |     | ||   | |   ||| | ||  ||||   ||      |||  | |||  ||||||| | |||||   | |||    | |  |     ||   |       |  | ||       ||   || |  |||| |||||| || || ||||||||  |||| |||||||| ||||| |||||||||||||| || || ||  | ||||||||  |||| |
-----------------gtcccttgtcgtttccttttgaacttttattat-catactcggctttttattttccttcttgt-tctactt---atttcgttctgattgtgcgctttgga-----attcatattc-----tagGTTGTAAGGAGTCCAAGTCTCGACTACTCACACTTTGTATCACTTCCATTAGCCATACATCCTGAGTTAGTGGACAAGCTAGTGAATTTTCAGAATTCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193497410|gb|FK461188.1|FK461188
EST:     CAACTAGCAGGAATTCAGCTTCAGAGAAGATACAGGCTATAATTGATGAG                         ACGGTTAATAGTCGAAGTCTTGATTATTCACACTTCATATCCCTTCCATTG
genomic: CAAC-AGCGGGAATTCAGCTTCAGAGAAGATACAGGCTATAATTGATGAGgtttgttgcc ... ttgataacagACGGTTAATAGTCGAAGTCTTGATTATTCACACTTCATATCCCTTCCATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcacacttcacagtcacagactaattcacatgtttgcttgtgtttgataacagACGGTTAATAGTCGAAGTCTTGATTATTCACACTTCATATCCCTTCCATTGGCCATTCATCCTGAGTTAGTTGATAAACTCATCAATTTTCAACATTCAA
                                            tttgataa  TA-rich tract