1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttaacacttggaagcaattacacatgttcaaaataagtaaacgtgactataaattagtatagcattagtgatgaataacattttgtacaataaaatgcagATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCCTTGGGTTGAGAAGCAGATTGTTCACCGGCCAAAGTTTTCAGATTGGCAG
species | Glycine max |
transcript | GLYMA13G42630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGGCGCCACTTCCATTAACGCTGGCTTCTACACTAGAGCAGACCCAAG ATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCCEST: gi|213604780|gb|DB960517.1|DB960517
genomic: GGTGGCGCCACTTCCATTAACGCTGGCTTCTACACTAGAGCAGACCCAAGgtaacaactt ... taaaatgcagATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCC
EST: GGTGGCGCCACTTCCATTAACGCTGGCTTCTACACTAGAGCAGACCCAAG ATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCC
genomic: GGTGGCGCCACTTCCATTAACGCTGGCTTCTACACTAGAGCAGACCCAAGgtaacaactt ... taaaatgcagATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCC
actataaattagtatagcattagtgatgaataacattttgtacaataaaatgcagATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCCTTGGGTTGAGAAGCAGATTGTTCACCGGCCAAAGTTTTCAGATTGGCAG
gaataac putative branch site (score: 2)
aataacattttgtaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaacacttggaagcaattacacatgttcaaaataagtaaacgtgactataaattagtatagcattagtgatgaataacattttgtacaataaaatgcagATTTATAAGGAAGGTGGGGTGGGATACAAAGCTAGTGAATGAGTCATATCCTTGGGTTGAGAAGCAGATTGTTCACCGGCCAAAGTTTTCAGATTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - cacttgg
- - - - - - - - - - - catgttc
- - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - gtgacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataac