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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgattagctgtaaagctttgatctgaaatctcacgttttatgccatgctaatttctatcaaaatagttgtattgactcgagtatattgctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAATGATGGCTGCCAATTACCTCCATACATAGCATTTTGACTTCCCCAAGGGT

Basic information

species Glycine max
transcript GLYMA13G41410.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41410.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g05560.t01 (Vitis vinifera), 3'ss of exon 2
gttgattagctgtaaagctttgatctgaaatctcacgttt-tatgccat-gctaatttctatcaaaatagttgtattgactcgagtatattgctc--ttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAATGATGGCTGCCAATTACCTCCATACATAGCATTTTGACTTCCCCAAGGGT
     |||| | |  |  | ||   | |||||  | |     ||||  |  ||  ||   ||     |  ||  | | |   |   || |||| |  ||   ||||||||||| || || ||||| |||||||||||  | ||||||||||| ||||||||||| || || || ||||| |       | |||           
-ccatttagttctgtacttctg---ttaaatcatatgcaagcatgcattcactgtttgtaatttttttttttaaacttaaatggaaatgttgccccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATGATGGCTGCTAACTATCTTCATACTTGAGGGGATCACTGTTTTTGCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346594|gb|BM891474.1|BM891474
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|209716404|gb|BW657499.1|BW657499
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|213615147|gb|DB963359.1|DB963359
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|209704051|gb|BW673651.1|BW673651
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|16276001|gb|BI941626.1|BI941626
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|31465164|gb|CD407192.1|CD407192
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|298167118|gb|HO010557.1|HO010557
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|24205228|gb|BU964481.1|BU964481
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|192302178|gb|FG996600.1|FG996600
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|31456662|gb|CD398690.1|CD398690
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATGGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|7639957|gb|AW734268.1|AW734268
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|192323451|gb|FK017092.1|FK017092
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|31467068|gb|CD409096.1|CD409096
EST:     ATTTTCGAGAAGATTTGCCAGTACTTTTATTGGCATTTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTTTGGAGTTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|21602717|gb|BQ613048.1|BQ613048
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|151407442|gb|EV277257.1|EV277257
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|209704052|gb|BW673652.1|BW673652
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|208288809|gb|GE086614.1|GE086614
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCC
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCC
EST: gi|213603156|gb|DB981024.1|DB981024
EST:     GTTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: -TTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|208045873|gb|GD848163.1|GD848163
EST:     AAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: AAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|19270875|gb|BM887131.1|BM887131
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|120532901|gb|EH261034.1|EH261034
EST:     GCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCA-TGAACCTGAATTAACTCTGGAGCTAAT
genomic: GCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|151394522|gb|EV264393.1|EV264393
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|21602076|gb|BQ612407.1|BQ612407
EST:     CATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: CATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
EST: gi|298175559|gb|HO018270.1|HO018270
EST:     ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAG                         TGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT
genomic: ATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATTCGCCAGgtttttcttt ... ctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgctaatttctatcaaaatagttgtattgactcgagtatattgctcttattagTGGGAAGGAGACGGAATTTCCCATTGAACCTGAATTAACTCTGGAGCTAATGATGGCTGCCAATTACCTCCATACATAGCATTTTGACTTCCCCAAGGGT
                          tattgac  putative branch site (score: 2)
                                          ttgctctt  putative PPT
     taatttctatcaaaat  TA-rich tract