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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctttcttgtgctggctaataataaaaccagcaatgctatgcaaggtttaatttgccaatgggaatgaatatggaccagatactgaatgtgaaaactctacttctttttaatctcacttgaagtaattgtctggcttggctggttgcccttatgcttgttccattaatttgtgtagGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCG

Basic information

species Glycine max
transcript GLYMA13G41060.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41060.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 3
gttagtctttcttgtgctggctaataataaaaccagcaatgctatgcaaggtttaatttgccaatgggaatgaatatggaccagatactgaatgtgaaaactctacttctttttaatctcacttgaagtaattgtctggcttggctggttgcccttatgcttgttccattaatttgt-gtagGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCG
                                                                           | | |  |  |  |||   | |    |  || ||  |   |  ||||   ||| |||  | | |        ||  |  |  |||    ||   |||||  | | ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||
---------------------------------------------------------------------------aagaataatgttttgatcttaatcttttcacatcact---agttcacaaaaaggaatgtttttgtgcaa--agtctctatggtgcc--atctggtaattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaattgtctggcttggctggttgcccttatgcttgttccattaatttgtgtagGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCG
                                        cattaat  putative branch site (score: 3)
                                         attaatttgt  TA-rich tract