1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatgtttgtgctatgttctttatgttttctaagtataccaatttgagctatactcatgactcatgagagcagatggctgatatatctctctgctgtcagGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAG
species | Glycine max |
transcript | GLYMA13G40980.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAG GTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATEST: gi|254336950|gb|GR843129.1|GR843129
genomic: AATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGgtttgttata ... ctgctgtcagGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGAT
EST: AATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAG GTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGAT
genomic: AATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGgtttgttata ... ctgctgtcagGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGAT
gagctatactcatgactcatgagagcagatggctgatatatctctctgctgtcagGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAG
ggctgat putative branch site (score: 4)
tctctctgct putative PPT
tgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgtttgtgctatgttctttatgttttctaagtataccaatttgagctatactcatgactcatgagagcagatggctgatatatctctctgctgtcagGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAG
- - -tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga