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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT

Basic information

species Glycine max
transcript GLYMA13G40780.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G166659_T01 (Zea mays), 3'ss of exon 3
taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
             |  |  |         | |  |  |    |||     ||  |   |     ||| | |   |  || | || || | ||  | ||||||||||||| |  |||||||| ||||| |   ||||||| || || || ||||| |||||||||||||| ||||| || ||||||  |||||     |  
-------------gttagcgctttgctccagtgtt--attttttgtgcataatttgttattttgtgcaactgagt--gattcttgatgtgtccat-gcagGCCTGATGGGAAGAAGAAGGCTTATGTGAAACTGACACCCGACTACGATGCCCTTGATGTGGCCAACAAAATTGGCATCATCTAAGTTAATAGGCAACTG

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaattt--ttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
             | |  | ||| |  |  ||| |   || | |   |   |  ||  |  |  | | || | ||    | | |  |||  || |||| |||||||||||||||||||||||| || || ||| | ||||| || ||||| ||  ||||||| || |||||||| || || ||||||    || |||  |  
-------------gtactttaaagagtatttttctatgaagccttgttgtgagattg-attatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 3'ss of exon 3
taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
                  | ||     ||| ||     | |  ||  || |     |||     ||          ||| | |  || ||| | | ||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| ||  |||||||||| ||||| || || || |||||| || ||   || |  
-----------------gtaaacactaaaacttcactgagatatgggtttatgtaaacatggagtg---------atgagtgt--atgtttgtat-gcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGCTTTGGATGTGGCTAACAAAATCGGGATCATCTAATCTGATCATTGTCGC

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 3'ss of exon 3
-taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttaca-acagatgccatttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
 ||| |   | ||    ||| |   || |   | |  || ||  | | ||       | | |     | ||  ||||||||   ||||||||| || | |||||||||||| ||||||||||| ||||| |||||||| || || ||||| ||| |||||||||||||||| ||||| || ||||||  ||  || || |  
ttagattggataaacttaattatg-aatatcctgagcaagaatgttcttttgctgggaaatattttcgacaactcttctga-cattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 3'ss of exon 2
-taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
 |   ||||   |   | ||  |        | | |            || | || |     | ||    ||   | |    |||  | ||| | || |||||||||||| || ||||| || ||||| |||||||| || |||||||| ||  |||||||||| ||||||||||| ||||| |||| || ||        
tttcttatatatatatatatcgagttggtggtgttttctttttccagttttatacctttcctaaattttgttctatatatccttttgtcttt-tatttcagGCCTGATGGGACAAAGAAAGCATATGTTAGGTTGACGCCAGATTATGATGCTTTGGATGTGGCAAACAAGATTGGTATTATTTAAAATAGTAACCA----

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 3'ss of exon 3
taggtataacaaggcaaatgaa----acaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT--
   | ||     |  | |||      | | ||| |  || |   |  ||   |     ||    || ||   || |   || |  ||  || ||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| |||||||||| |||||||| || || |||||||    ||||| ||||  
-cagaatggtgtgatatatgggcatcataccaagtggattagcgatgtggcatagtggttgt--caaat-tgatatgaactaaccttctatctttgtgttgcagGCCTGATGGAACCAAGAAGGCTTATGTTAGGTTGACACCGGACTATGATGCCTTGGATGTGGCAAACAAGATCGGGATCATCTAAATC--TATATTGCCTTT

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 3'ss of exon 1
taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaatttttctgttg---cagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
||  | |     ||     | |   |     | || |     |  |||||     ||  |    ||  ||||||  ||   |  ||||| ||| ||    ||||||||||||| |||||||||| || || ||  ||||| | |||||||| || || ||||||||||||||||| || || || |||| |      |    |
taattttttttgggatttcgtattgatttgat-atcacctgttcccattcctctctaggatg--tgaaatttctaatgtggtcaaatttatctattttctcagGCCTGATGGAGCCAAGAAGGCTTACGTGAGACTGACAGCAGATTATGATGCGCTTGATGTGGCCAACAAGATCGGTATCATATAAATTTTCTGTTCAATT

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S146_96V6.1 (Physcomitrella patens), 3'ss of exon 1
-taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaat-ttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT--
 ||| ||     | ||   |     |  |||  |  |   ||   | |      | | |||       |       ||||  | |  | |||| |    ||| ||||||||| | |||||||| ||||| ||||||||  | ||||| ||||| || ||||| |||||||||||||| || || || | |   || ||  ||  
gtagttac--tgacgctcgtctggtaggaaaactgggtgcaatgcgtaagtcgccgttcaattctcatctacgtggctgacgtatcctgtttttttccccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGCTCTTGATGTTGCCAACAAGATTGGCATCATTTAGATTG-CAT-TGCTCTTA

upper sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 3'ss of exon 1
taggtataacaa-ggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgcc--atttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
  |  || ||       | |||   ||  |   |   |   |||||      |  | | |    || ||  ||||| | ||  | | ||  | | | ||  |||||||||||| | |||||||| ||||| || |||||| ||||||| || || || |||||||||||||||||||| || ||||||| |      |    |
--gaaatcacggcaatgattgagttaatcagagtccaatttacttgttccggaggtgaaactccatccctgatttcctatgtgtctcaacatgttt-ttctagGCCTGATGGAGCTAAGAAGGCGTATGTGAGATTGACAGCTGATTACGATGCGCTTGATGTGGCCAACAAGATTGGTATCATCTAAATTTTCTGTTCAATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179404|gb|HO027875.1|HO027875
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192333698|gb|FK025463.1|FK025463
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|38193232|gb|CF922438.1|CF922438
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|213611065|gb|DB970992.1|DB970992
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|214009761|gb|DB987961.1|DB987961
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8402069|gb|BE057703.1|BE057703
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|6951766|gb|AW423834.1|AW423834
EST:     GTCAAGAAGATGTATGATATTCATGCCAAGAAAGTGAACACCTTGATCAG                         GCCTGATGGAACCAAGAAAGGC-TATGTCAGGTTGACACCTGATTATGACG
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAA-GGCCTATGTCAGGTTGACACCTGATTATGACG
EST: gi|6747734|gb|AW318190.1|AW318190
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|151394626|gb|EV264497.1|EV264497
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|6666174|gb|AW277633.1|AW277633
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|7639320|gb|AW733645.1|AW733645
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|193348870|gb|FK315216.1|FK315216
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|6913503|gb|AW395033.1|AW395033
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|51337227|gb|CO981093.1|CO981093
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8285163|gb|BE022722.1|BE022722
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAAGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8286339|gb|BE023898.1|BE023898
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192315065|gb|FK010435.1|FK010435
EST:     GTCAAGAAGATGTATGAT-T-CAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|31561020|gb|CD486858.1|CD486858
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCCTGATTATGACG
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACC-TGATTATGACG
EST: gi|13181470|gb|BG352810.1|BG352810
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192333713|gb|FK025464.1|FK025464
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|10254581|gb|BE822347.1|BE822347
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192317448|gb|FK011266.1|FK011266
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|38193398|gb|CF922604.1|CF922604
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192311405|gb|FK003498.1|FK003498
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|31305688|gb|CD390891.1|CD390891
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATCCCCACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192301644|gb|FG997600.1|FG997600
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|5753483|gb|AI960770.1|AI960770
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|15814025|gb|BI786300.1|BI786300
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192316257|gb|FK011644.1|FK011644
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGGCGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|38192506|gb|CF921712.1|CF921712
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192317447|gb|FK011265.1|FK011265
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192301545|gb|FG994113.1|FG994113
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|213620120|gb|DB965412.1|DB965412
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192300561|gb|FG991513.1|FG991513
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192315066|gb|FK010436.1|FK010436
EST:     GTCAAGAAGATGTATGAT-T-CAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|20812652|gb|BQ297130.1|BQ297130
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192316256|gb|FK011643.1|FK011643
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGGCGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192311404|gb|FK003497.1|FK003497
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|57575683|gb|CX548658.1|CX548658
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8826760|gb|BE210490.1|BE210490
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|151398829|gb|EV268700.1|EV268700
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcaaacttacaacagatgccatttcttctgaattttaatttttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT
                                         tttttctgtt  CT-rich tract
                       atttcttctgaatttt  TA-rich tract