1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccttccctctctctttcatatcaaatccctaattcctaattggattgaaatgcttacgaatttgaatgcgtttgttgtgtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAGCAAAAAGCAGCGCTGAGAGAGGCTTACAAGAAGAAGAAATACCTTCCT
species | Glycine max |
transcript | GLYMA13G40700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAAT CAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAEST: gi|151409720|gb|EV279528.1|EV279528
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAATgtaccttccc ... gtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAA
EST: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAAT CAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAEST: gi|213595278|gb|DB964011.1|DB964011
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAATgtaccttccc ... gtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAA
EST: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAAT CAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAEST: gi|298184397|gb|HO029610.1|HO029610
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAATgtaccttccc ... gtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAA
EST: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAAT CAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAEST: gi|192319942|gb|FK013312.1|FK013312
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAATgtaccttccc ... gtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAA
EST: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAAT CAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAEST: gi|31463526|gb|CD405554.1|CD405554
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAATgtaccttccc ... gtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAA
EST: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCCAAAT CAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGAGCCCCGAACAAGCTTTCCAAAATgtaccttccc ... gtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAA
tcctaattggattgaaatgcttacgaatttgaatgcgtttgttgtgtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAGCAAAAAGCAGCGCTGAGAGAGGCTTACAAGAAGAAGAAATACCTTCCT
tgcttac putative branch site (score: 2)
aatttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttccctctctctttcatatcaaatccctaattcctaattggattgaaatgcttacgaatttgaatgcgtttgttgtgtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAGCAAAAAGCAGCGCTGAGAGAGGCTTACAAGAAGAAGAAATACCTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA